MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.8 nTPM
HPA Brain:11.3 nTPM
GTEx:5.8 nTPM
FANTOM5:16.8 Scaled Tags Per Million
Pig:3.7 nTPM
Mouse:0.2 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 11.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.4
1830 Male, age 51, unknown 10.9
2019 Male, age 18, unknown 10.8
2411 Female, age 72, unknown 10.2
1870 Female, age 42, unknown 10.0
1833 Male, age 53, unknown 8.8
2828 Female, age 72, unknown 8.1
2586 Male, age 75, left hemisphere 7.9
2219 Male, age 76, both hemispheres 6.9
2666 Male, age 74, left hemisphere 5.2
1827 Male, age 72, unknown 5.0
Dorsal raphe nucleus
nTPM: 5.0
2750 Male, age 76, both hemispheres 9.4
1828 Male, age 53, unknown 5.3
2016 Female, age 72, unknown 4.9
2047 Male, age 72, unknown 3.5
2298 Female, age 72, unknown 2.0
Inferior colliculus
nTPM: 4.1
1890 Male, age 53, unknown 5.3
1848 Female, age 42, unknown 4.8
2849 Male, age 72, unknown 3.5
2097 Female, age 72, unknown 2.8
Median raphe nucleus
nTPM: 4.5
2220 Male, age 76, midline 4.5
Periaquaductal grey, anterior
nTPM: 3.0
1947 Male, age 18, unknown 3.3
2502 Female, age 75, unknown 3.1
1795 Male, age 51, unknown 2.6
Periaquaductal grey, dorsal
nTPM: 2.7
2464 Female, age 72, unknown 4.3
1831 Male, age 72, unknown 3.7
2850 Male, age 76, both hemispheres 2.1
1840 Male, age 53, unknown 0.9
Periaquaductal grey, lateral
nTPM: 3.7
2272 Male, age 74, both hemispheres 4.6
2053 Male, age 18, unknown 4.1
2140 Male, age 76, both hemispheres 2.3
Pretectal area
nTPM: 4.0
2407 Male, age 75, both hemispheres 6.2
1815 Male, age 53, unknown 5.5
2316 Male, age 76, right hemisphere 4.9
2825 Male, age 18, unknown 4.5
2007 Male, age 72, unknown 4.4
1817 Female, age 42, unknown 3.8
2273 Male, age 74, both hemispheres 3.7
2667 Female, age 75, unknown 3.3
2224 Female, age 72, unknown 3.0
1944 Female, age 72, unknown 2.5
1816 Male, age 51, unknown 1.7
Red nucleus
nTPM: 11.3
1865 Male, age 51, unknown 14.5
2769 Male, age 72, unknown 12.6
2584 Male, age 75, left hemisphere 12.2
2785 Male, age 18, unknown 12.1
1904 Male, age 53, unknown 11.8
1821 Female, age 72, unknown 11.7
2227 Male, age 72, unknown 11.3
2588 Male, age 74, left hemisphere 10.9
2503 Female, age 72, unknown 10.5
2823 Male, age 76, right hemisphere 10.3
2725 Female, age 75, unknown 9.1
1954 Female, age 42, unknown 8.9
Substantia nigra
nTPM: 6.6
2583 Male, age 75, right hemisphere 13.3
1851 Male, age 51, unknown 7.3
2590 Female, age 75, unknown 7.1
2409 Female, age 72, unknown 7.0
1941 Male, age 53, unknown 6.3
2699 Male, age 18, unknown 6.0
1889 Female, age 72, unknown 5.9
1916 Female, age 42, unknown 4.8
2241 Male, age 72, unknown 4.7
2665 Male, age 74, both hemispheres 3.4
Superior colliculus
nTPM: 5.6
1913 Female, age 42, unknown 11.2
1995 Male, age 72, unknown 8.5
2587 Male, age 74, left hemisphere 7.2
2668 Female, age 75, unknown 6.1
1839 Male, age 51, unknown 5.8
1895 Male, age 76, right hemisphere 4.6
1796 Male, age 53, unknown 3.7
2664 Male, age 75, both hemispheres 3.4
2087 Female, age 72, unknown 2.9
2261 Male, age 18, unknown 2.3
Ventral tegmental area
nTPM: 8.3
2223 Female, age 72, unknown 14.4
2021 Male, age 53, unknown 8.8
2410 Female, age 72, unknown 7.6
1942 Male, age 51, unknown 7.2
2218 Male, age 76, both hemispheres 6.9
1915 Female, age 42, unknown 4.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.8
Samples: 139

Max nTPM: 30.4
Min nTPM: 0.2
Std nTPM: 4.6
Median nTPM: 4.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 30.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 30.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 23.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 19.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 16.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 16.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 13.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 12.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 11.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 10.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 10.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.8
FF:10158-103A5 76 years, female 16.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 3.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.0
Samples: 4

Max nTPM: 5.3
Min nTPM: 1.2
Sample A Female 2.8
Sample B Female 1.2
Sample C Male 2.5
Sample D Male 5.3
Midbrain
nTPM: 3.7
Samples: 4

Max nTPM: 10.4
Min nTPM: 1.1
Sample A Female 10.4
Sample B Female 2.0
Sample C Male 1.2
Sample D Male 1.1
Periaqueductal gray
nTPM: 1.7
Samples: 3

Max nTPM: 2.0
Min nTPM: 1.2
Sample B Female 1.9
Sample C Male 1.2
Sample D Male 2.0
Superior colliculi
nTPM: 1.9
Samples: 4

Max nTPM: 2.8
Min nTPM: 0.9
Sample A Female 1.9
Sample B Female 0.9
Sample C Male 1.8
Sample D Male 2.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.2
Sample A Male 0.3
Sample B Male 0.2
Sample C Female 0.2
Sample D Female 0.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
69289171 Antisense, RP_050407_02_F07, Mouse strain C57BL/6J (56 days, male) 0.5

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