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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • GAD1
BRAIN HYPOTHALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hypothalamus
Brain methods
HYPOTHALAMUS - Expression summary
Mouse brain, Intensity
Hypothalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

111.020
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:57.5 nTPM
HPA Brain:236.5 nTPM
GTEx:57.5 nTPM
Pig:57.2 nTPM
Mouse:127.7 nTPM
Allen mouse:17.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HYPOTHALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity.

, antibody CAB078176
Hypothalamus mean intensity 111.020
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

FRONT BACK
Dorsal tuberomammillary nucleus -
Mammillary nucleus -
Periventricular hypothalamic nucleus 76.040
Supraoptic nucleus 27.010
Tuberal nucleus 34.600
Ventral tuberomammillary nucleus -
Lateral preoptic area 74.647
Medial preoptic area 77.037
Suprachiasmatic nucleus 99.340
Paraventricular hypothalamic nucleus 42.470
Anterior hypothalamic area, central 43.570
Ventral medial hypothalamic nucleus 53.210
Ventral medial hypothalamic nucleus* -
Arcuate nucleus 90.070
Arcuate nucleus* -
Peduncular part of lateral hypothalmus -
Dorsal medial hypothalamic nucleus 77.500
Stria terminalis* -

HYPOTHALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

236.5
Sample id Sample description nTPM
Arcuate nucleus
nTPM: 236.5
2226 Male, age 75, left hemisphere 389.8
1961 Female, age 42, unknown 83.3
Dorsomedial nucleus
nTPM: 78.6
2017 Female, age 42, unknown 97.8
2041 Female, age 72, unknown 80.3
1989 Male, age 62, unknown 57.8
Lateral hypothalamic area
nTPM: 127.3
2271 Male, age 75, both hemispheres 172.4
2228 Male, age 66, unknown 161.1
1791 Male, age 80, right hemisphere 118.2
2412 Male, age 62, unknown 57.5
Mammillary body
nTPM: 29.0
2413 Male, age 66, unknown 44.6
1948 Female, age 72, unknown 38.3
1834 Female, age 42, unknown 26.9
1923 Female, age 72, unknown 23.6
1945 Male, age 80, right hemisphere 11.6
Paraventricular nucleus
nTPM: 49.9
2700 Male, age 62, unknown 49.9
Preoptic area
nTPM: 107.8
1907 Male, age 80, right hemisphere 150.1
1861 Female, age 42, unknown 103.1
2414 Female, age 72, unknown 70.1
Supraoptic nucleus
nTPM: 47.8
1894 Female, age 72, unknown 65.7
2835 Female, age 72, unknown 54.2
2043 Male, age 62, unknown 23.7
Ventromedial nucleus
nTPM: 32.4
1822 Female, age 42, unknown 51.2
1982 Female, age 72, unknown 13.7

HYPOTHALAMUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.5
GTEx sample id Sample description nTPM
Brain - Hypothalamus
Average nTPM: 57.5
Samples: 257

Max nTPM: 154.9
Min nTPM: 1.8
Std nTPM: 33.7
Median nTPM: 53.1
GTEX-1B8L1-0011-R8b-SM-7P8ST 60-69 years, male 154.9
GTEX-1J8Q2-0011-R8b-SM-D4P2E 60-69 years, male 148.8
GTEX-QMR6-0011-R8A-SM-32PKJ 50-59 years, male 143.8
GTEX-13QIC-0011-R8b-SM-5O9CV 60-69 years, female 143.2
GTEX-1A8G6-0011-R8a-SM-7P8PD 60-69 years, male 141.5
GTEX-1HB9E-0011-R8b-SM-A9G1O 50-59 years, male 138.0
GTEX-11NV4-0011-R8b-SM-GHWO4 60-69 years, male 137.0
GTEX-1C6WA-0011-R8b-SM-7P8S7 60-69 years, male 128.8
GTEX-13NYB-0011-R8a-SM-5KM4R 40-49 years, male 122.9
GTEX-1LVAO-0011-R8a-SM-F3K5J 60-69 years, male 121.0
GTEX-1F6IF-0011-R8a-SM-9OSX5 60-69 years, male 119.5
GTEX-15RJE-0011-R8a-SM-H7OGM 40-49 years, male 117.7
GTEX-YFC4-0011-R8a-SM-4SOK3 40-49 years, female 116.8
GTEX-13OW7-0011-R8b-SM-5L3HR 50-59 years, male 114.2
GTEX-15CHQ-0011-R8b-SM-CNPO4 60-69 years, male 114.1
GTEX-X585-0011-R8A-SM-46MUX 50-59 years, male 112.6
GTEX-14DAQ-0011-R8a-SM-G9ERP 60-69 years, female 111.7
GTEX-1LSNL-0011-R8b-SM-F2TAH 50-59 years, male 111.5
GTEX-11GSO-0011-R8b-SM-GJ3PM 60-69 years, male 111.2
GTEX-NPJ8-0011-R8a-SM-2HMLG 40-49 years, male 109.7
GTEX-X261-0011-R8A-SM-4E3I5 50-59 years, male 109.0
GTEX-16YQH-0011-R8a-SM-7DUFB 30-39 years, male 106.8
GTEX-1N2DW-0011-R8a-SM-EY5YD 50-59 years, male 106.3
GTEX-11DXY-0011-R8a-SM-DO11M 60-69 years, male 105.0
GTEX-1LVA9-0011-R8a-SM-F3K5G 50-59 years, male 104.5
GTEX-1IKK5-0011-R8b-SM-CJI45 60-69 years, male 103.6
GTEX-1F88E-0011-R8a-SM-CJI2H 60-69 years, female 103.3
GTEX-1GF9V-0011-R8b-SM-CE6RB 60-69 years, male 102.3
GTEX-14BMV-0011-R8a-SM-G9ERM 50-59 years, male 101.5
GTEX-1I1GQ-0011-R8a-SM-C1YRS 50-59 years, male 100.9
GTEX-1399T-0011-R8b-SM-5IJD8 60-69 years, male 100.2
GTEX-1HFI6-0011-R8a-SM-ARZLP 40-49 years, male 99.1
GTEX-WZTO-0011-R8A-SM-4E3II 40-49 years, male 98.9
GTEX-1LG7Y-0011-R8b-SM-F3K5C 50-59 years, male 98.5
GTEX-P44H-0011-R8A-SM-2XCEL 40-49 years, male 98.4
GTEX-QVUS-0011-R8A-SM-3GAD7 60-69 years, female 95.2
GTEX-13NZA-0011-R8b-SM-5KM2Q 60-69 years, male 94.2
GTEX-T5JC-0011-R8A-SM-32PLM 20-29 years, male 93.8
GTEX-WL46-0011-R8B-SM-H7OHG 50-59 years, male 93.8
GTEX-Z93S-0011-R8a-SM-4RGNL 50-59 years, male 93.3
GTEX-117XS-0011-R8b-SM-GHWOD 60-69 years, male 92.1
GTEX-1A8G7-0011-R8a-SM-7P8S6 60-69 years, male 92.1
GTEX-1I1HK-0011-R8b-SM-E8VN9 60-69 years, male 91.8
GTEX-1313W-0011-R8a-SM-5DUVM 50-59 years, female 91.7
GTEX-1JMQJ-0011-R8a-SM-G8LKT 50-59 years, male 91.0
GTEX-16NPV-0011-R8a-SM-7EPH8 50-59 years, female 90.9
GTEX-1AX9I-0011-R8a-SM-7P8PJ 60-69 years, male 90.6
GTEX-1C6VR-0011-R8b-SM-7MXUF 60-69 years, male 90.1
GTEX-1GTWX-0011-R8a-SM-CE6RM 60-69 years, male 89.9
GTEX-15ER7-0011-R8a-SM-7KUL2 20-29 years, female 89.7
GTEX-1HT8W-0011-R8b-SM-CM2SX 30-39 years, male 89.4
GTEX-1F52S-0011-R8a-SM-9OSXA 60-69 years, female 86.3
GTEX-1GN73-0011-R8b-SM-CKZNY 60-69 years, male 85.9
GTEX-1R9PO-0011-R8a-SM-F2TA3 60-69 years, female 85.0
GTEX-1JMOU-0011-R8b-SM-F2TA9 60-69 years, female 84.0
GTEX-13RTJ-0011-R8b-SM-5O9DL 60-69 years, male 83.5
GTEX-13N1W-0011-R8a-SM-5MR56 70-79 years, male 83.4
GTEX-13X6K-0011-R8b-SM-5PNZ4 60-69 years, female 83.3
GTEX-1GMR8-0011-R8a-SM-CKZNX 50-59 years, female 83.1
GTEX-11DXW-0011-R8a-SM-GIN8T 40-49 years, male 82.7
GTEX-13OVL-0011-R8a-SM-5L3HH 50-59 years, male 82.5
GTEX-13O3Q-0011-R8b-SM-5KM2J 50-59 years, male 81.8
GTEX-1LSVX-0011-R8a-SM-F2TB3 60-69 years, male 81.4
GTEX-12ZZX-0011-R8a-SM-5DUW8 40-49 years, female 81.1
GTEX-14C5O-0011-R8a-SM-5YYAG 60-69 years, male 81.1
GTEX-14E7W-0011-R8b-SM-GQ1D6 70-79 years, male 80.4
GTEX-1MA7X-0011-R8a-SM-G9EQD 60-69 years, male 80.4
GTEX-1MJK2-0011-R8a-SM-F341I 50-59 years, male 80.2
GTEX-1LH75-0011-R8b-SM-F2TB2 50-59 years, female 79.6
GTEX-1F48J-0011-R8a-SM-9OSWW 50-59 years, female 79.2
GTEX-13PLJ-0011-R8a-SM-GJ3QG 60-69 years, female 79.0
GTEX-13X6J-0011-R8b-SM-5PNUA 50-59 years, male 78.7
GTEX-13OVH-0011-R8b-SM-5MR35 70-79 years, male 77.6
GTEX-1NV8Z-0011-R8b-SM-F3K3J 60-69 years, male 77.1
GTEX-11DYG-0011-R8a-SM-DO93F 60-69 years, male 76.6
GTEX-1JMLX-0011-R8a-SM-G9EPQ 50-59 years, male 76.4
GTEX-17EVP-0011-R8b-SM-7DUF9 40-49 years, male 76.2
GTEX-1B933-0011-R8a-SM-9QEGX 50-59 years, female 76.1
GTEX-1O9I2-0011-R8a-SM-F2TAX 50-59 years, male 76.0
GTEX-PWO3-0011-R8A-SM-2I5GD 60-69 years, female 75.7
GTEX-ZVZQ-0011-R8a-SM-51MR5 60-69 years, female 75.1
GTEX-13CIG-0011-R8b-SM-5LZX5 50-59 years, male 74.5
GTEX-ZAJG-0011-R8a-SM-H6Q6K 50-59 years, female 73.9
GTEX-1E1VI-0011-R8b-SM-ARU8E 50-59 years, male 73.6
GTEX-1GZ2Q-0011-R8a-SM-CE6RO 40-49 years, male 73.4
GTEX-15EO6-0011-R8a-SM-H6Q6R 50-59 years, male 72.5
GTEX-1N2EF-0011-R8a-SM-F6481 60-69 years, male 72.5
GTEX-1HSKV-0011-R8a-SM-CL54X 60-69 years, male 72.4
GTEX-14PJO-0011-R8a-SM-6AJAL 60-69 years, male 72.0
GTEX-1GZ4I-0011-R8b-SM-9WG76 50-59 years, male 71.8
GTEX-1EMGI-0011-R8b-SM-9QEID 60-69 years, male 71.4
GTEX-13SLW-0011-R8b-SM-5SI64 70-79 years, male 71.3
GTEX-14JIY-0011-R8a-SM-6AJAP 60-69 years, male 70.6
GTEX-X4XX-0011-R8B-SM-46MWM 60-69 years, male 70.5
GTEX-14ASI-0011-R8b-SM-5S2UB 60-69 years, male 70.4
GTEX-15DYW-0011-R8b-SM-GRR3B 60-69 years, female 70.3
GTEX-1HCU6-0011-R8a-SM-CJI3R 60-69 years, female 70.3
GTEX-17EVQ-0011-R8a-SM-7189T 70-79 years, male 67.9
GTEX-144GL-0011-R8a-SM-5Q5B1 50-59 years, male 66.7
GTEX-1R46S-0011-R8a-SM-F3K4Q 60-69 years, female 66.6
GTEX-13OW6-0011-R8a-SM-5L3GF 50-59 years, male 66.5
GTEX-14PJM-0011-R8b-SM-69LPD 50-59 years, female 66.2
GTEX-11OF3-0011-R8b-SM-57WCS 60-69 years, male 66.0
GTEX-1N2EE-0011-R8a-SM-F3K4X 60-69 years, male 65.4
GTEX-18465-0011-R8b-SM-7LG6O 50-59 years, male 64.9
GTEX-1IDJH-0011-R8b-SM-ARZLL 70-79 years, male 64.7
GTEX-NL4W-0011-R8a-SM-2I3G4 50-59 years, male 64.6
GTEX-12126-0011-R8a-SM-GI4WV 20-29 years, male 64.3
GTEX-1LKK1-0011-R8a-SM-F341O 50-59 years, female 64.2
GTEX-145LU-0011-R8b-SM-5PNZG 50-59 years, male 62.9
GTEX-1MCQQ-0011-R8b-SM-F341H 60-69 years, male 62.0
GTEX-13VXU-0011-R8b-SM-GJ3RR 50-59 years, male 60.6
GTEX-RVPV-0011-R8A-SM-F21II 60-69 years, male 60.5
GTEX-13CF2-0011-R8b-SM-5IJCX 60-69 years, male 60.1
GTEX-1KD4Q-0011-R8a-SM-F341N 40-49 years, male 59.8
GTEX-1IKOH-0011-R8a-SM-A9SKG 60-69 years, female 59.1
GTEX-1H3NZ-0011-R8a-SM-CKZP6 60-69 years, male 58.3
GTEX-11ONC-0011-R8b-SM-5NQ87 60-69 years, male 56.8
GTEX-14LZ3-0011-R8b-SM-COH3M 60-69 years, female 56.6
GTEX-1QMI2-0011-R8a-SM-F3429 60-69 years, male 56.5
GTEX-132Q8-0011-R8b-SM-5DUWX 60-69 years, male 56.4
GTEX-1I1GS-0011-R8b-SM-CKZPE 60-69 years, male 56.0
GTEX-1B996-0011-R8b-SM-79OOS 60-69 years, male 55.4
GTEX-1F6I4-0011-R8a-SM-9QEIA 60-69 years, male 55.1
GTEX-1HCVE-0011-R8a-SM-ARU7A 50-59 years, male 54.2
GTEX-11WQK-0011-R8a-SM-5BC7C 50-59 years, male 53.9
GTEX-11ZUS-0011-R8a-SM-5BC73 30-39 years, male 53.9
GTEX-16XZZ-0011-R8b-SM-7LT8S 60-69 years, male 53.6
GTEX-11WQC-0011-R8b-SM-57WCH 60-69 years, male 53.1
GTEX-T6MN-0011-R8A-SM-32QP3 50-59 years, male 53.0
GTEX-11DZ1-0011-R8b-SM-DNZZI 50-59 years, male 52.8
GTEX-1I1CD-0011-R8b-SM-CJI3X 60-69 years, female 52.2
GTEX-13FXS-0011-R8a-SM-5J1MN 50-59 years, male 51.8
GTEX-17HG3-0011-R8a-SM-79OK7 30-39 years, female 51.4
GTEX-1ICLZ-0011-R8b-SM-ACKX4 60-69 years, male 51.4
GTEX-1477Z-0011-R8b-SM-5S2RG 60-69 years, male 51.0
GTEX-1HGF4-0011-R8b-SM-CKZP9 60-69 years, male 51.0
GTEX-17HII-0011-R8a-SM-79OK6 50-59 years, male 50.9
GTEX-1NV5F-0011-R8b-SM-F647Z 60-69 years, female 50.7
GTEX-ZYY3-0011-R8a-SM-H7OHF 60-69 years, female 50.7
GTEX-ZAK1-0011-R8a-SM-H7OGE 50-59 years, female 50.5
GTEX-11ZTS-0011-R8a-SM-57WDI 60-69 years, female 50.2
GTEX-1RQEC-0011-R8b-SM-F648X 60-69 years, male 50.2
GTEX-145MH-0011-R8a-SM-5PNUL 50-59 years, male 49.3
GTEX-1A3MX-0011-R8a-SM-7P8PI 60-69 years, male 49.0
GTEX-ZDXO-0011-R8a-SM-4WWD7 60-69 years, male 48.2
GTEX-11O72-0011-R8a-SM-GJ3R9 40-49 years, male 46.7
GTEX-13O3O-0011-R8b-SM-5LUAL 60-69 years, female 46.4
GTEX-13OW5-0011-R8a-SM-5L3GQ 60-69 years, male 46.0
GTEX-13G51-0011-R8b-SM-5LZZ4 60-69 years, male 45.0
GTEX-1F75W-0011-R8a-SM-9QEI4 60-69 years, male 44.9
GTEX-1JMQK-0011-R8a-SM-G8LMS 60-69 years, male 44.9
GTEX-16Z82-0011-R8a-SM-7DUEX 60-69 years, male 43.9
GTEX-1192X-0011-R8b-SM-DO11U 50-59 years, male 43.5
GTEX-1J1OQ-0011-R8a-SM-ACKVE 40-49 years, female 42.9
GTEX-1BAJH-0011-R8a-SM-7MXUB 70-79 years, male 42.7
GTEX-1JJEA-0011-R8a-SM-F3419 60-69 years, male 42.6
GTEX-1E2YA-0011-R8a-SM-CKZNG 50-59 years, male 42.5
GTEX-14BIL-0011-R8b-SM-69LQK 50-59 years, male 40.9
GTEX-1CB4H-0011-R8b-SM-CJI26 60-69 years, female 40.2
GTEX-1GN1U-0011-R8a-SM-CL537 50-59 years, female 40.1
GTEX-RNOR-0011-R8A-SM-EZ6MN 50-59 years, female 40.1
GTEX-13QJC-0011-R8b-SM-5S2U6 60-69 years, female 40.0
GTEX-1F75A-0011-R8a-SM-CL539 50-59 years, male 39.6
GTEX-14PQA-0011-R8b-SM-6AJAB 50-59 years, female 39.2
GTEX-ZXG5-0011-R8a-SM-57WD1 60-69 years, male 38.8
GTEX-1OJC4-0011-R8a-SM-F3K5B 50-59 years, female 38.3
GTEX-13SLX-0011-R8b-SM-5PNWZ 50-59 years, female 37.1
GTEX-16GPK-0011-R8a-SM-79OMQ 60-69 years, male 36.3
GTEX-1PWST-0011-R8a-SM-F3K5P 70-79 years, male 36.1
GTEX-1N5O9-0011-R8a-SM-F649C 60-69 years, male 35.4
GTEX-12696-0011-R8a-SM-GINAP 60-69 years, male 35.3
GTEX-1POEN-0011-R8b-SM-F647O 30-39 years, female 34.4
GTEX-QVJO-0011-R8A-SM-447C7 60-69 years, female 34.1
GTEX-1PPGY-0011-R8a-SM-F649R 60-69 years, male 33.9
GTEX-1RLM8-0011-R8a-SM-EYYXR 50-59 years, male 33.2
GTEX-1IY9M-0011-R8a-SM-EYYWW 60-69 years, male 33.1
GTEX-S7SE-0011-R8A-SM-F649T 50-59 years, male 33.0
GTEX-13OVJ-0011-R8b-SM-5L3FS 50-59 years, female 32.9
GTEX-17F97-0011-R8a-SM-7DUET 50-59 years, male 32.9
GTEX-1H3O1-0011-R8a-SM-CL555 60-69 years, male 32.5
GTEX-ZZPT-0011-R8a-SM-GQ1CW 50-59 years, male 32.3
GTEX-14PN4-0011-R8a-SM-6EU1H 50-59 years, male 31.9
GTEX-ZUA1-0011-R8b-SM-51MST 40-49 years, male 31.7
GTEX-1RDX4-0011-R8a-SM-G8LLT 50-59 years, female 31.6
GTEX-13FLV-0011-R8a-SM-5LZZE 50-59 years, male 31.0
GTEX-1JMPZ-0011-R8b-SM-F341A 30-39 years, male 30.6
GTEX-13OW8-0011-R8a-SM-5L3G5 60-69 years, male 30.1
GTEX-13PVQ-0011-R8a-SM-GJ3PT 50-59 years, male 30.1
GTEX-1P4AB-0011-R8a-SM-F341R 50-59 years, male 30.1
GTEX-13NYS-0011-R8a-SM-5MR5H 60-69 years, male 30.0
GTEX-13PDP-0011-R8b-SM-5O9CS 60-69 years, male 29.2
GTEX-131XH-0011-R8a-SM-5EGLL 50-59 years, male 29.1
GTEX-1CB4G-0011-R8b-SM-9WG7H 60-69 years, male 29.1
GTEX-139TS-0011-R8a-SM-5J1NP 60-69 years, male 28.3
GTEX-1HBPH-0011-R8b-SM-CL556 40-49 years, female 28.1
GTEX-11H98-0011-R8a-SM-5NQ8V 50-59 years, male 27.4
GTEX-13X6I-0011-R8a-SM-5PNZF 60-69 years, male 26.9
GTEX-YJ89-0011-R8b-SM-4SOK8 60-69 years, male 26.8
GTEX-1H1DG-0011-R8a-SM-CL54Z 70-79 years, male 26.6
GTEX-131XW-0011-R8a-SM-5DUWY 50-59 years, female 25.7
GTEX-WHSE-0011-R8A-SM-3P5Z1 20-29 years, male 25.6
GTEX-117YW-0011-R8a-SM-GINAB 50-59 years, male 25.3
GTEX-1HBPI-0011-R8a-SM-A9G1S 50-59 years, male 25.3
GTEX-12WSM-0011-R8a-SM-5DUWJ 60-69 years, male 25.2
GTEX-1JN1M-0011-R8b-SM-F6485 60-69 years, female 25.2
GTEX-ZAB4-0011-R8b-SM-4SOKF 40-49 years, male 24.8
GTEX-ZVT3-0011-R8b-SM-57WDJ 60-69 years, female 23.5
GTEX-147F4-0011-R8b-SM-5S2UN 50-59 years, male 23.1
GTEX-1RAZS-0011-R8a-SM-F2TBI 50-59 years, male 23.1
GTEX-15G19-0011-R8b-SM-7KUL1 60-69 years, male 22.9
GTEX-1445S-0011-R8a-SM-5PNWX 60-69 years, male 22.5
GTEX-1GZHY-0011-R8b-SM-9OSWK 50-59 years, female 22.5
GTEX-WWYW-0011-R8A-SM-3NB3S 50-59 years, female 22.4
GTEX-XMD1-0011-R8A-SM-4AT48 60-69 years, male 22.3
GTEX-1B8SG-0011-R8b-SM-7IGNW 50-59 years, male 22.2
GTEX-ZF28-0011-R8a-SM-4WWFW 60-69 years, male 21.9
GTEX-1RQED-0011-R8a-SM-G8LKO 60-69 years, male 21.8
GTEX-QDT8-0011-R8A-SM-G8W63 30-39 years, female 21.3
GTEX-13JVG-0011-R8a-SM-5KM3E 60-69 years, male 21.0
GTEX-OXRN-0011-R8A-SM-E9TI1 50-59 years, male 20.6
GTEX-1C64N-0011-R8b-SM-7MGXE 50-59 years, male 20.1
GTEX-1KANB-0011-R8a-SM-F3K5N 50-59 years, male 19.1
GTEX-1GF9W-0011-R8b-SM-9QEIR 60-69 years, male 18.7
GTEX-1CAV2-0011-R8a-SM-GRR24 40-49 years, female 17.9
GTEX-15SHU-0011-R8a-SM-H6Q7V 40-49 years, female 17.6
GTEX-111FC-0011-R8b-SM-GI4VS 60-69 years, male 17.1
GTEX-11EI6-0011-R8a-SM-DO93M 60-69 years, male 17.1
GTEX-13FLW-0011-R8b-SM-5J1MZ 50-59 years, male 16.9
GTEX-Y8DK-0011-R8B-SM-EYYVQ 60-69 years, male 16.7
GTEX-145LS-0011-R8b-SM-5PNXA 60-69 years, female 16.6
GTEX-1KWVE-0011-R8a-SM-F3K4V 30-39 years, male 16.3
GTEX-11GS4-0011-R8b-SM-GI4XA 60-69 years, male 16.0
GTEX-1GN2E-0011-R8a-SM-CE6RK 60-69 years, male 15.8
GTEX-15DCD-0011-R8b-SM-7KUEF 70-79 years, female 15.1
GTEX-1H1ZS-0011-R8b-SM-A9SKA 70-79 years, male 14.3
GTEX-1JN6P-0011-R8a-SM-F6499 60-69 years, male 14.2
GTEX-11EMC-0011-R8b-SM-DO91Z 60-69 years, female 14.1
GTEX-1H1CY-0011-R8b-SM-CJI31 60-69 years, female 14.1
GTEX-1CB4J-0011-R8a-SM-9QEHU 60-69 years, male 13.5
GTEX-1R9K4-0011-R8b-SM-F649L 60-69 years, male 13.1
GTEX-1GN1V-0011-R8a-SM-CKZNV 60-69 years, male 13.0
GTEX-1CAMQ-0011-R8a-SM-ARU85 40-49 years, male 12.6
GTEX-12WSA-0011-R8a-SM-5P9EX 60-69 years, male 12.4
GTEX-WVLH-0011-R8A-SM-3MJFC 50-59 years, male 12.0
GTEX-14753-0011-R8b-SM-5S2U1 60-69 years, male 11.5
GTEX-N7MS-0011-R8a-SM-2YUMK 60-69 years, male 11.2
GTEX-1B8SF-0011-R8b-SM-7P8SX 60-69 years, male 10.8
GTEX-X4XY-0011-R8A-SM-46MVC 60-69 years, male 10.4
GTEX-1QP6S-0011-R8a-SM-F649M 40-49 years, male 10.2
GTEX-11GSP-0011-R8b-SM-5NQ79 60-69 years, female 9.2
GTEX-11TTK-0011-R8b-SM-DO111 60-69 years, female 9.2
GTEX-13112-0011-R8b-SM-664OV 50-59 years, male 6.7
GTEX-12WSD-0011-R8b-SM-9QEGI 60-69 years, female 5.0
GTEX-1QEPI-0011-R8a-SM-G8LLI 60-69 years, female 4.6
GTEX-1H23P-0011-R8b-SM-A9G1G 60-69 years, male 4.3
GTEX-11ZU8-0011-R8b-SM-GHWOM 60-69 years, male 1.8
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HYPOTHALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.2
Pig sample Sample description nTPM
Hypothalamus
nTPM: 57.2
Samples: 4

Max nTPM: 74.1
Min nTPM: 41.1
Sample A Female 74.1
Sample B Female 41.1
Sample C Male 60.3
Sample D Male 53.2

HYPOTHALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.7
Mouse sample Sample description nTPM
Hypothalamus
nTPM: 127.7
Samples: 4

Max nTPM: 144.1
Min nTPM: 114.3
Sample A Male 121.4
Sample B Male 144.1
Sample C Female 114.3
Sample D Female 131.1

HYPOTHALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

17.2
Allen experiment id Experiment description Expression energy
Hypothalamus
Expression energy: 17.2
75496150 Antisense, RP_060523_03_F06, Mouse strain C57BL/6J (56 days, male) 24.3
75496558 Antisense, RP_060523_03_F06, Mouse strain C57BL/6J (56 days, male) 23.3
75492764 Antisense, RP_060523_03_F06, Mouse strain C57BL/6J (56 days, male) 23.1
75492754 Antisense, RP_060523_03_E06, Mouse strain C57BL/6J (56 days, male) 21.9
75457536 Antisense, RP_060523_03_E06, Mouse strain C57BL/6J (56 days, male) 21.7
75496539 Antisense, RP_060523_03_E06, Mouse strain C57BL/6J (56 days, male) 21.6
75496569 Antisense, RP_060523_03_H06, Mouse strain C57BL/6J (56 days, male) 21.4
75457537 Antisense, RP_060523_03_F06, Mouse strain C57BL/6J (56 days, male) 21.3
75457538 Antisense, RP_060523_03_G06, Mouse strain C57BL/6J (56 days, male) 20.8
75492774 Antisense, RP_060523_03_G06, Mouse strain C57BL/6J (56 days, male) 20.8
75496152 Antisense, RP_060523_03_H06, Mouse strain C57BL/6J (56 days, male) 20.7
69117383 Antisense, RP_050330_01_A06, Mouse strain C57BL/6J (56 days, male) 20.5
75492784 Antisense, RP_060523_03_H06, Mouse strain C57BL/6J (56 days, male) 20.5
75496151 Antisense, RP_060523_03_G06, Mouse strain C57BL/6J (56 days, male) 20.4
75496149 Antisense, RP_060523_03_E06, Mouse strain C57BL/6J (56 days, male) 19.1
75496559 Antisense, RP_060523_03_G06, Mouse strain C57BL/6J (56 days, male) 19.1
75457539 Antisense, RP_060523_03_H06, Mouse strain C57BL/6J (56 days, male) 18.9
79556706 Antisense, RP_071204_01_D08, Mouse strain C57BL/6J (56 days, male) 16.3
480 Antisense, RP_040324_01_F01, Mouse strain C57BL/6J (56 days, male) 12.4
479 Antisense, RP_040324_01_F01, Mouse strain C57BL/6J (56 days, male) 12.2
71891707 Antisense, RP_051005_04_D11, Mouse strain C57BL/6J (56 days, male) 0.0

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