MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.3 nTPM
HPA Brain:56.1 nTPM
GTEx:20.3 nTPM
FANTOM5:68.5 Scaled Tags Per Million
Pig:31.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 56.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.3
2219 Male, age 76, both hemispheres 52.2
2411 Female, age 72, unknown 37.1
1870 Female, age 42, unknown 35.8
2666 Male, age 74, left hemisphere 35.5
1833 Male, age 53, unknown 34.8
2586 Male, age 75, left hemisphere 33.9
2019 Male, age 18, unknown 33.1
1830 Male, age 51, unknown 32.4
1827 Male, age 72, unknown 31.1
2828 Female, age 72, unknown 26.7
Dorsal raphe nucleus
nTPM: 30.4
1828 Male, age 53, unknown 31.6
2750 Male, age 76, both hemispheres 31.4
2016 Female, age 72, unknown 30.4
2047 Male, age 72, unknown 30.3
2298 Female, age 72, unknown 28.4
Inferior colliculus
nTPM: 29.3
2097 Female, age 72, unknown 33.6
1890 Male, age 53, unknown 32.0
1848 Female, age 42, unknown 28.6
2849 Male, age 72, unknown 22.9
Median raphe nucleus
nTPM: 34.2
2220 Male, age 76, midline 34.2
Periaquaductal grey, anterior
nTPM: 34.0
2502 Female, age 75, unknown 41.6
1947 Male, age 18, unknown 35.5
1795 Male, age 51, unknown 24.8
Periaquaductal grey, dorsal
nTPM: 27.9
1831 Male, age 72, unknown 29.6
2464 Female, age 72, unknown 28.7
1840 Male, age 53, unknown 27.5
2850 Male, age 76, both hemispheres 25.9
Periaquaductal grey, lateral
nTPM: 24.4
2272 Male, age 74, both hemispheres 27.1
2053 Male, age 18, unknown 23.4
2140 Male, age 76, both hemispheres 22.5
Pretectal area
nTPM: 31.8
2007 Male, age 72, unknown 40.5
1815 Male, age 53, unknown 38.5
1817 Female, age 42, unknown 36.2
1944 Female, age 72, unknown 36.0
1816 Male, age 51, unknown 34.4
2667 Female, age 75, unknown 30.4
2273 Male, age 74, both hemispheres 29.7
2224 Female, age 72, unknown 27.7
2407 Male, age 75, both hemispheres 27.4
2825 Male, age 18, unknown 24.8
2316 Male, age 76, right hemisphere 24.1
Red nucleus
nTPM: 32.9
1821 Female, age 72, unknown 39.6
1904 Male, age 53, unknown 37.0
2725 Female, age 75, unknown 36.0
2584 Male, age 75, left hemisphere 34.7
1954 Female, age 42, unknown 34.2
1865 Male, age 51, unknown 33.5
2503 Female, age 72, unknown 33.3
2588 Male, age 74, left hemisphere 32.4
2785 Male, age 18, unknown 30.2
2227 Male, age 72, unknown 28.9
2769 Male, age 72, unknown 28.8
2823 Male, age 76, right hemisphere 25.6
Substantia nigra
nTPM: 56.1
1916 Female, age 42, unknown 83.4
2241 Male, age 72, unknown 72.2
2699 Male, age 18, unknown 70.4
1851 Male, age 51, unknown 68.1
1941 Male, age 53, unknown 60.3
2409 Female, age 72, unknown 54.3
1889 Female, age 72, unknown 42.5
2665 Male, age 74, both hemispheres 40.1
2583 Male, age 75, right hemisphere 37.4
2590 Female, age 75, unknown 32.8
Superior colliculus
nTPM: 30.5
2668 Female, age 75, unknown 37.4
2087 Female, age 72, unknown 33.1
2261 Male, age 18, unknown 32.1
1913 Female, age 42, unknown 30.5
2587 Male, age 74, left hemisphere 30.1
1995 Male, age 72, unknown 29.7
2664 Male, age 75, both hemispheres 29.0
1796 Male, age 53, unknown 28.2
1895 Male, age 76, right hemisphere 28.1
1839 Male, age 51, unknown 27.4
Ventral tegmental area
nTPM: 51.2
2218 Male, age 76, both hemispheres 64.8
1915 Female, age 42, unknown 58.4
1942 Male, age 51, unknown 55.4
2410 Female, age 72, unknown 54.1
2223 Female, age 72, unknown 44.4
2021 Male, age 53, unknown 30.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 20.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.3
Samples: 183

Max nTPM: 55.2
Min nTPM: 10.5
Std nTPM: 7.0
Median nTPM: 18.8
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 55.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 44.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 42.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 42.9
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 40.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 39.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 37.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 36.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 35.8
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 33.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 33.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 68.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.5
FF:10158-103A5 76 years, female 68.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 31.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.3
Samples: 4

Max nTPM: 32.9
Min nTPM: 14.5
Sample A Female 32.9
Sample B Female 26.6
Sample C Male 27.2
Sample D Male 14.5
Midbrain
nTPM: 27.9
Samples: 4

Max nTPM: 39.4
Min nTPM: 20.6
Sample A Female 20.6
Sample B Female 24.9
Sample C Male 39.4
Sample D Male 26.5
Periaqueductal gray
nTPM: 21.4
Samples: 3

Max nTPM: 23.3
Min nTPM: 20.2
Sample B Female 20.2
Sample C Male 23.3
Sample D Male 20.6
Superior colliculi
nTPM: 31.9
Samples: 4

Max nTPM: 39.5
Min nTPM: 24.8
Sample A Female 31.1
Sample B Female 39.5
Sample C Male 32.0
Sample D Male 24.8

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