HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:49.9 nTPM
HPA Brain:43.2 nTPM
GTEx:49.9 nTPM
FANTOM5:22.8 Scaled Tags Per Million
Pig:15.2 nTPM
Mouse:21.3 nTPM
Allen mouse:1.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA037811Antibody HPA037812
Glial cells Not detectedNot detected
Neuronal cells HighLow



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 43.2
Sample id Sample description nTPM
Hippocampus
nTPM: 37.6
1898 Male, age 80, left hemisphere 43.7
2621 Female, age 67, right hemisphere 40.0
2148 Female, age 91, left hemisphere 37.9
2529 Female, age 94, left hemisphere 35.0
1855 Male, age 76, left hemisphere 34.8
1911 Female, age 85, right hemisphere 34.1
Dentate gyrus
nTPM: 43.2
2530 Female, age 94, left hemisphere 65.5
1927 Female, age 91, both hemispheres 45.6
2010 Male, age 76, both hemispheres 42.2
2531 Female, age 67, both hemispheres 37.4
2528 Male, age 74, both hemispheres 35.6
2246 Female, age 85, both hemispheres 33.0
Entorhinal gyrus
nTPM: 35.9
1938 Female, age 85, left hemisphere 39.9
2613 Female, age 94, left hemisphere 39.4
2764 Male, age 80, right hemisphere 35.8
1787 Male, age 76, left hemisphere 34.6
2686 Male, age 75, right hemisphere 34.2
2117 Female, age 91, right hemisphere 31.2
Hippocampus, CA1
nTPM: 41.3
2749 Male, age 80, left hemisphere 62.4
2045 Male, age 76, both hemispheres 40.0
1873 Female, age 85, both hemispheres 37.7
2527 Male, age 74, both hemispheres 36.4
2082 Female, age 91, right hemisphere 29.8
Hippocampus, CA2
nTPM: 42.8
1963 Male, age 80, left hemisphere 62.9
2437 Female, age 94, left hemisphere 54.5
1892 Male, age 76, both hemispheres 47.1
2249 Male, age 74, both hemispheres 35.1
2113 Female, age 91, right hemisphere 29.3
1940 Female, age 85, left hemisphere 27.9
Hippocampus, CA3
nTPM: 39.5
2137 Male, age 80, left hemisphere 50.2
2861 Female, age 67, both hemispheres 42.1
1867 Male, age 76, both hemispheres 41.1
1891 Female, age 85, both hemispheres 37.0
2436 Male, age 74, both hemispheres 33.9
2620 Female, age 94, left hemisphere 32.8
Parahippocampal cortex
nTPM: 35.9
2245 Female, age 91, both hemispheres 41.7
2018 Male, age 76, both hemispheres 40.8
2250 Female, age 67, right hemisphere 40.1
1850 Male, age 80, both hemispheres 40.0
1990 Female, age 91, right hemisphere 37.4
1933 Female, age 85, both hemispheres 35.8
2622 Female, age 67, right hemisphere 33.0
2693 Female, age 94, both hemispheres 32.6
2532 Female, age 72, left hemisphere 32.4
2692 Male, age 74, both hemispheres 25.6
Perirhinal gyrus
nTPM: 38.6
1847 Female, age 91, left hemisphere 46.4
1794 Male, age 80, right hemisphere 41.1
1841 Female, age 85, right hemisphere 38.6
2521 Female, age 94, right hemisphere 36.0
2848 Male, age 76, right hemisphere 30.8
Subiculum
nTPM: 31.4
1901 Male, age 80, both hemispheres 37.9
1977 Female, age 85, both hemispheres 35.6
2729 Female, age 91, right hemisphere 33.2
2619 Male, age 74, both hemispheres 29.2
2042 Male, age 76, both hemispheres 28.0
2438 Female, age 94, left hemisphere 24.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 49.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 49.9
Samples: 255

Max nTPM: 111.4
Min nTPM: 17.1
Std nTPM: 16.4
Median nTPM: 47.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 111.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 105.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 105.1
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 98.5
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 98.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 94.2
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 92.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 88.3
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 86.5
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 83.9
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 81.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 22.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 22.8
FF:10153-102I9 76 years, female 24.9
FF:10169-103B7 60 years, female 20.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 15.2
Pig sample Sample description nTPM
Subiculum
nTPM: 10.7
Samples: 4

Max nTPM: 16.5
Min nTPM: 7.8
Sample A Female 16.5
Sample B Female 10.5
Sample C Male 7.8
Sample D Male 8.0
Dorsal hippocampus
nTPM: 8.2
Samples: 4

Max nTPM: 9.7
Min nTPM: 4.5
Sample A Female 9.7
Sample B Female 9.0
Sample C Male 4.5
Sample D Male 9.7
Entorhinal cortex
nTPM: 15.2
Samples: 4

Max nTPM: 18.5
Min nTPM: 11.3
Sample A Female 18.5
Sample B Female 17.8
Sample C Male 13.2
Sample D Male 11.3
Ventral hippocampus
nTPM: 7.9
Samples: 4

Max nTPM: 8.9
Min nTPM: 5.9
Sample A Female 5.9
Sample B Female 8.6
Sample C Male 8.9
Sample D Male 8.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 21.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 21.4
Samples: 4

Max nTPM: 23.6
Min nTPM: 19.9
Sample A Male 21.1
Sample B Male 20.8
Sample C Female 19.9
Sample D Female 23.6
Hippocampal formation
nTPM: 17.8
Samples: 4

Max nTPM: 21.3
Min nTPM: 15.8
Sample A Male 21.3
Sample B Male 17.0
Sample C Female 15.8
Sample D Female 16.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.4
71764482 Antisense, RP_050926_01_C05, Mouse strain C57BL/6J (56 days, male) 1.4

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