MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.6 nTPM
HPA Brain:76.0 nTPM
GTEx:45.6 nTPM
FANTOM5:19.3 Scaled Tags Per Million
Pig:11.6 nTPM
Mouse:14.9 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 76.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.2
2219 Male, age 76, both hemispheres 40.8
2411 Female, age 72, unknown 33.1
2666 Male, age 74, left hemisphere 32.0
1827 Male, age 72, unknown 31.1
1833 Male, age 53, unknown 30.0
2586 Male, age 75, left hemisphere 29.2
1870 Female, age 42, unknown 27.8
2828 Female, age 72, unknown 27.2
1830 Male, age 51, unknown 26.1
2019 Male, age 18, unknown 24.4
Dorsal raphe nucleus
nTPM: 46.2
2047 Male, age 72, unknown 66.3
2298 Female, age 72, unknown 55.2
2750 Male, age 76, both hemispheres 42.8
1828 Male, age 53, unknown 34.5
2016 Female, age 72, unknown 32.1
Inferior colliculus
nTPM: 34.9
2097 Female, age 72, unknown 40.4
1890 Male, age 53, unknown 36.4
2849 Male, age 72, unknown 31.6
1848 Female, age 42, unknown 31.2
Median raphe nucleus
nTPM: 76.0
2220 Male, age 76, midline 76.0
Periaquaductal grey, anterior
nTPM: 39.9
1947 Male, age 18, unknown 49.8
2502 Female, age 75, unknown 36.9
1795 Male, age 51, unknown 32.9
Periaquaductal grey, dorsal
nTPM: 30.9
1840 Male, age 53, unknown 36.3
2464 Female, age 72, unknown 31.0
2850 Male, age 76, both hemispheres 28.9
1831 Male, age 72, unknown 27.3
Periaquaductal grey, lateral
nTPM: 28.4
2053 Male, age 18, unknown 31.8
2140 Male, age 76, both hemispheres 27.7
2272 Male, age 74, both hemispheres 25.8
Pretectal area
nTPM: 31.7
1816 Male, age 51, unknown 38.8
1944 Female, age 72, unknown 37.7
2667 Female, age 75, unknown 34.2
2007 Male, age 72, unknown 33.2
1817 Female, age 42, unknown 32.4
1815 Male, age 53, unknown 31.9
2825 Male, age 18, unknown 31.1
2316 Male, age 76, right hemisphere 29.5
2224 Female, age 72, unknown 29.4
2273 Male, age 74, both hemispheres 26.3
2407 Male, age 75, both hemispheres 24.5
Red nucleus
nTPM: 25.6
2725 Female, age 75, unknown 29.1
1821 Female, age 72, unknown 28.8
2584 Male, age 75, left hemisphere 28.4
2503 Female, age 72, unknown 27.1
2588 Male, age 74, left hemisphere 26.7
1954 Female, age 42, unknown 25.1
2823 Male, age 76, right hemisphere 24.9
1865 Male, age 51, unknown 24.2
2769 Male, age 72, unknown 24.0
2227 Male, age 72, unknown 23.6
2785 Male, age 18, unknown 22.8
1904 Male, age 53, unknown 22.6
Substantia nigra
nTPM: 46.1
1916 Female, age 42, unknown 67.5
2241 Male, age 72, unknown 56.7
1851 Male, age 51, unknown 53.1
1941 Male, age 53, unknown 53.1
2409 Female, age 72, unknown 49.7
2665 Male, age 74, both hemispheres 46.7
2699 Male, age 18, unknown 39.7
1889 Female, age 72, unknown 34.6
2583 Male, age 75, right hemisphere 31.2
2590 Female, age 75, unknown 28.4
Superior colliculus
nTPM: 28.7
2668 Female, age 75, unknown 38.0
1796 Male, age 53, unknown 33.7
2261 Male, age 18, unknown 30.7
1895 Male, age 76, right hemisphere 30.6
2587 Male, age 74, left hemisphere 30.5
2087 Female, age 72, unknown 30.3
1839 Male, age 51, unknown 26.6
2664 Male, age 75, both hemispheres 25.2
1913 Female, age 42, unknown 22.3
1995 Male, age 72, unknown 18.9
Ventral tegmental area
nTPM: 43.1
2410 Female, age 72, unknown 52.3
2218 Male, age 76, both hemispheres 46.5
1915 Female, age 42, unknown 45.7
1942 Male, age 51, unknown 44.2
2223 Female, age 72, unknown 35.3
2021 Male, age 53, unknown 34.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 45.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.6
Samples: 183

Max nTPM: 144.2
Min nTPM: 11.9
Std nTPM: 25.0
Median nTPM: 38.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 144.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 139.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 121.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 119.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 118.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 116.2
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 110.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 98.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 97.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 95.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 93.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 19.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.3
FF:10158-103A5 76 years, female 19.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 11.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.8
Samples: 4

Max nTPM: 16.5
Min nTPM: 4.9
Sample A Female 16.5
Sample B Female 7.2
Sample C Male 10.6
Sample D Male 4.9
Midbrain
nTPM: 11.3
Samples: 4

Max nTPM: 13.9
Min nTPM: 7.3
Sample A Female 11.3
Sample B Female 13.9
Sample C Male 7.3
Sample D Male 12.8
Periaqueductal gray
nTPM: 11.6
Samples: 3

Max nTPM: 14.2
Min nTPM: 9.0
Sample B Female 11.6
Sample C Male 14.2
Sample D Male 9.0
Superior colliculi
nTPM: 11.6
Samples: 4

Max nTPM: 20.4
Min nTPM: 5.7
Sample A Female 20.4
Sample B Female 11.1
Sample C Male 5.7
Sample D Male 9.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.9
Samples: 4

Max nTPM: 16.4
Min nTPM: 13.8
Sample A Male 16.4
Sample B Male 15.4
Sample C Female 13.8
Sample D Female 14.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
71764482 Antisense, RP_050926_01_C05, Mouse strain C57BL/6J (56 days, male) 0.7

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