HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:12.3 nTPM
HPA Brain:18.6 nTPM
GTEx:12.3 nTPM
FANTOM5:14.3 Scaled Tags Per Million
Pig:5.2 nTPM
Mouse:10.9 nTPM
Allen mouse:3.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA013397
Glial cells Not detected
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 18.6
Sample id Sample description nTPM
Hippocampus
nTPM: 18.3
2148 Female, age 91, left hemisphere 22.4
1855 Male, age 76, left hemisphere 19.5
2529 Female, age 94, left hemisphere 19.4
1911 Female, age 85, right hemisphere 17.9
1898 Male, age 80, left hemisphere 17.4
2621 Female, age 67, right hemisphere 13.5
Dentate gyrus
nTPM: 17.2
2528 Male, age 74, both hemispheres 23.8
2530 Female, age 94, left hemisphere 19.3
2246 Female, age 85, both hemispheres 16.6
1927 Female, age 91, both hemispheres 15.2
2010 Male, age 76, both hemispheres 15.1
2531 Female, age 67, both hemispheres 13.4
Entorhinal gyrus
nTPM: 16.4
2117 Female, age 91, right hemisphere 27.1
1787 Male, age 76, left hemisphere 16.6
2764 Male, age 80, right hemisphere 16.1
2686 Male, age 75, right hemisphere 15.0
1938 Female, age 85, left hemisphere 13.0
2613 Female, age 94, left hemisphere 10.9
Hippocampus, CA1
nTPM: 15.4
2082 Female, age 91, right hemisphere 20.4
1873 Female, age 85, both hemispheres 18.1
2527 Male, age 74, both hemispheres 15.4
2045 Male, age 76, both hemispheres 13.3
2749 Male, age 80, left hemisphere 9.8
Hippocampus, CA2
nTPM: 16.9
1940 Female, age 85, left hemisphere 19.3
2113 Female, age 91, right hemisphere 18.5
2249 Male, age 74, both hemispheres 16.9
2437 Female, age 94, left hemisphere 16.7
1963 Male, age 80, left hemisphere 16.6
1892 Male, age 76, both hemispheres 13.2
Hippocampus, CA3
nTPM: 15.8
2861 Female, age 67, both hemispheres 19.2
2620 Female, age 94, left hemisphere 18.5
1867 Male, age 76, both hemispheres 17.2
1891 Female, age 85, both hemispheres 15.5
2436 Male, age 74, both hemispheres 13.3
2137 Male, age 80, left hemisphere 11.1
Parahippocampal cortex
nTPM: 13.8
2622 Female, age 67, right hemisphere 18.1
2692 Male, age 74, both hemispheres 16.9
2018 Male, age 76, both hemispheres 16.3
1990 Female, age 91, right hemisphere 13.5
1850 Male, age 80, both hemispheres 13.1
2245 Female, age 91, both hemispheres 12.8
2250 Female, age 67, right hemisphere 12.5
1933 Female, age 85, both hemispheres 12.2
2693 Female, age 94, both hemispheres 11.6
2532 Female, age 72, left hemisphere 10.8
Perirhinal gyrus
nTPM: 11.4
1794 Male, age 80, right hemisphere 14.2
2848 Male, age 76, right hemisphere 12.4
2521 Female, age 94, right hemisphere 10.7
1841 Female, age 85, right hemisphere 9.9
1847 Female, age 91, left hemisphere 9.9
Subiculum
nTPM: 18.6
2729 Female, age 91, right hemisphere 27.2
2619 Male, age 74, both hemispheres 20.3
2042 Male, age 76, both hemispheres 19.5
2438 Female, age 94, left hemisphere 16.9
1901 Male, age 80, both hemispheres 16.6
1977 Female, age 85, both hemispheres 11.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 12.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.3
Samples: 255

Max nTPM: 27.3
Min nTPM: 3.5
Std nTPM: 4.1
Median nTPM: 12.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 27.3
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 26.2
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 25.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 23.9
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 22.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 21.7
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 21.5
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 21.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 21.3
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 21.0
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 20.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 14.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 14.3
FF:10153-102I9 76 years, female 15.1
FF:10169-103B7 60 years, female 13.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 5.2
Pig sample Sample description nTPM
Subiculum
nTPM: 4.3
Samples: 4

Max nTPM: 4.7
Min nTPM: 3.6
Sample A Female 4.4
Sample B Female 4.6
Sample C Male 3.6
Sample D Male 4.7
Dorsal hippocampus
nTPM: 5.0
Samples: 4

Max nTPM: 6.7
Min nTPM: 3.5
Sample A Female 5.5
Sample B Female 4.4
Sample C Male 6.7
Sample D Male 3.5
Entorhinal cortex
nTPM: 3.8
Samples: 4

Max nTPM: 4.5
Min nTPM: 2.5
Sample A Female 4.3
Sample B Female 3.7
Sample C Male 4.5
Sample D Male 2.5
Ventral hippocampus
nTPM: 5.2
Samples: 4

Max nTPM: 5.8
Min nTPM: 3.9
Sample A Female 5.3
Sample B Female 3.9
Sample C Male 5.8
Sample D Male 5.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 10.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 10.6
Samples: 4

Max nTPM: 12.0
Min nTPM: 9.9
Sample A Male 9.9
Sample B Male 10.0
Sample C Female 10.5
Sample D Female 12.0
Hippocampal formation
nTPM: 10.9
Samples: 4

Max nTPM: 11.9
Min nTPM: 9.1
Sample A Male 11.4
Sample B Male 11.1
Sample C Female 9.1
Sample D Female 11.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 3.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.0
68745396 Antisense, RP_050210_01_H03, Mouse strain C57BL/6J (56 days, male) 3.0

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