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  • AIPL1
TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:775.1 nTPM
GTEx:775.1 nTPM
FANTOM5:381.5 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA026578
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

775.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 775.1
Samples: 105

Max nTPM: 1437.3
Min nTPM: 288.8
Std nTPM: 235.3
Median nTPM:
352_1 62 years, male 1437.3
218_1 71 years, female 1425.9
386_1 76 years, male 1238.9
354_1 81 years, female 1219.9
319_1 81 years, male 1201.2
355_1 70 years, female 1160.3
237_1 82 years, male 1159.3
163_1 78 years, male 1142.1
316_1 62 years, male 1141.7
172_1 72 years, female 1105.4
322_1 76 years, male 1103.5
6_1 73 years, female 1094.8
375_1 74 years, female 1060.6
321_1 62 years, female 1057.9
405_1 91 years, male 1039.1
35_1 74 years, female 1020.3
447_1 81 years, male 1016.4
425_1 59 years, female 1013.6
292_1 71 years, male 994.2
377_1 82 years, female 990.8
350_1 84 years, female 968.7
356_1 87 years, female 963.4
229_1 69 years, female 957.6
318_1 68 years, male 931.1
320_1 89 years, female 928.3
353_1 82 years, female 923.3
189_1 76 years, male 915.7
379_1 60 years, male 915.1
243_1 75 years, male 912.2
389_1 86 years, female 895.5
153_1 70 years, female 893.2
480_1 63 years, male 892.8
246_1 77 years, male 891.3
526_1 61 years, male 888.9
293_1 68 years, female 882.2
251_1 78 years, male 864.7
376_1 75 years, female 854.8
126_1 63 years, male 854.0
286_1 68 years, female 848.6
518_1 75 years, female 845.4
394_1 75 years, female 842.0
335_1 73 years, female 837.5
217_1 76 years, male 826.6
349_1 83 years, male 826.6
503_1 68 years, male 824.3
307_1 66 years, female 812.1
348_1 84 years, male 805.7
347_1 72 years, male 796.0
404_1 82 years, female 772.6
406_1 79 years, male 770.0
177_1 74 years, male 763.7
468_1 89 years, male 763.3
137_1 83 years, male 761.8
9_1 66 years, female 746.6
117_1 61 years, male 743.9
81_1 67 years, male 740.4
291_1 76 years, male 727.4
466_1 57 years, female 713.9
324_1 76 years, male 712.6
415_1 77 years, female 708.7
517_1 88 years, male 704.7
17_1 71 years, male 696.2
43_1 64 years, female 687.3
266_1 85 years, male 686.6
2_1 77 years, female 686.2
351_1 91 years, male 681.0
145_1 84 years, male 663.8
311_1 78 years, male 661.1
499_1 55 years, female 657.0
396_1 62 years, male 656.3
115_1 83 years, male 655.3
18_1 88 years, male 645.8
99_1 64 years, male 643.7
173_1 67 years, male 642.1
265_1 87 years, male 639.8
495_1 57 years, female 639.7
384_1 83 years, male 634.4
490_1 67 years, female 626.4
317_1 60 years, male 617.5
142_1 61 years, female 610.5
254_1 77 years, female 608.2
288_1 66 years, female 602.1
264_1 73 years, female 595.7
162_1 79 years, female 583.3
4_1 88 years, female 578.3
506_1 65 years, male 574.4
120_1 70 years, female 552.7
452_1 88 years, female 549.9
42_1 85 years, male 517.5
313_1 79 years, female 509.7
32_1 67 years, male 505.5
139_1 64 years, female 492.5
315_1 62 years, female 482.8
295_1 61 years, female 478.5
491_1 89 years, female 475.7
414_1 84 years, female 465.8
109_1 81 years, female 463.6
119_1 70 years, female 462.5
149_1 88 years, male 449.1
314_1 67 years, male 409.2
41_1 94 years, female 396.3
308_1 70 years, female 370.6
89_1 63 years, male 347.3
413_1 59 years, female 345.4
501_1 88 years, male 288.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

381.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 381.5
FF:10030-101E3 24-65 years, mixed 381.5

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