HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:80.2 nTPM
HPA Brain:96.7 nTPM
GTEx:80.2 nTPM
FANTOM5:113.4 Scaled Tags Per Million
Pig:28.9 nTPM
Mouse:90.4 nTPM
Allen mouse:10.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody CAB040539
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 96.7
Sample id Sample description nTPM
Hippocampus
nTPM: 79.5
1898 Male, age 80, left hemisphere 93.4
2621 Female, age 67, right hemisphere 82.8
2148 Female, age 91, left hemisphere 79.1
2529 Female, age 94, left hemisphere 78.9
1855 Male, age 76, left hemisphere 77.0
1911 Female, age 85, right hemisphere 65.9
Dentate gyrus
nTPM: 80.2
2530 Female, age 94, left hemisphere 108.1
1927 Female, age 91, both hemispheres 82.6
2010 Male, age 76, both hemispheres 81.8
2531 Female, age 67, both hemispheres 79.9
2246 Female, age 85, both hemispheres 66.2
2528 Male, age 74, both hemispheres 62.9
Entorhinal gyrus
nTPM: 96.7
2686 Male, age 75, right hemisphere 117.0
2764 Male, age 80, right hemisphere 108.1
2613 Female, age 94, left hemisphere 92.3
1787 Male, age 76, left hemisphere 90.1
2117 Female, age 91, right hemisphere 87.5
1938 Female, age 85, left hemisphere 85.4
Hippocampus, CA1
nTPM: 72.8
2749 Male, age 80, left hemisphere 89.9
1873 Female, age 85, both hemispheres 74.9
2082 Female, age 91, right hemisphere 72.3
2045 Male, age 76, both hemispheres 66.2
2527 Male, age 74, both hemispheres 60.4
Hippocampus, CA2
nTPM: 83.0
1963 Male, age 80, left hemisphere 106.6
1892 Male, age 76, both hemispheres 96.9
2437 Female, age 94, left hemisphere 88.3
2113 Female, age 91, right hemisphere 73.9
1940 Female, age 85, left hemisphere 72.5
2249 Male, age 74, both hemispheres 60.2
Hippocampus, CA3
nTPM: 73.8
2861 Female, age 67, both hemispheres 95.4
1867 Male, age 76, both hemispheres 82.4
1891 Female, age 85, both hemispheres 77.6
2137 Male, age 80, left hemisphere 75.3
2620 Female, age 94, left hemisphere 65.3
2436 Male, age 74, both hemispheres 47.2
Parahippocampal cortex
nTPM: 86.8
1850 Male, age 80, both hemispheres 103.6
1990 Female, age 91, right hemisphere 95.6
2532 Female, age 72, left hemisphere 95.2
2622 Female, age 67, right hemisphere 92.4
1933 Female, age 85, both hemispheres 89.2
2692 Male, age 74, both hemispheres 86.3
2693 Female, age 94, both hemispheres 81.7
2245 Female, age 91, both hemispheres 80.4
2018 Male, age 76, both hemispheres 73.8
2250 Female, age 67, right hemisphere 69.9
Perirhinal gyrus
nTPM: 95.3
1794 Male, age 80, right hemisphere 108.2
1847 Female, age 91, left hemisphere 99.9
2848 Male, age 76, right hemisphere 96.5
1841 Female, age 85, right hemisphere 92.5
2521 Female, age 94, right hemisphere 79.5
Subiculum
nTPM: 81.1
2438 Female, age 94, left hemisphere 99.7
1901 Male, age 80, both hemispheres 85.7
1977 Female, age 85, both hemispheres 83.8
2729 Female, age 91, right hemisphere 75.6
2042 Male, age 76, both hemispheres 72.4
2619 Male, age 74, both hemispheres 69.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 80.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 80.2
Samples: 255

Max nTPM: 208.0
Min nTPM: 32.7
Std nTPM: 25.8
Median nTPM: 74.3
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 208.0
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 203.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 201.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 158.2
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 155.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 149.9
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 143.7
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 138.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 130.9
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 129.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 128.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 113.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 113.4
FF:10153-102I9 76 years, female 115.7
FF:10169-103B7 60 years, female 111.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 28.9
Pig sample Sample description nTPM
Subiculum
nTPM: 25.3
Samples: 4

Max nTPM: 28.4
Min nTPM: 22.7
Sample A Female 28.4
Sample B Female 25.9
Sample C Male 24.1
Sample D Male 22.7
Dorsal hippocampus
nTPM: 24.1
Samples: 4

Max nTPM: 25.0
Min nTPM: 22.8
Sample A Female 24.5
Sample B Female 25.0
Sample C Male 24.1
Sample D Male 22.8
Entorhinal cortex
nTPM: 28.9
Samples: 4

Max nTPM: 33.5
Min nTPM: 26.2
Sample A Female 26.2
Sample B Female 33.5
Sample C Male 26.9
Sample D Male 29.0
Ventral hippocampus
nTPM: 24.9
Samples: 4

Max nTPM: 26.4
Min nTPM: 23.7
Sample A Female 23.7
Sample B Female 24.3
Sample C Male 26.4
Sample D Male 25.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 90.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 90.4
Samples: 4

Max nTPM: 92.3
Min nTPM: 89.0
Sample A Male 89.2
Sample B Male 92.3
Sample C Female 89.0
Sample D Female 91.2
Hippocampal formation
nTPM: 74.2
Samples: 4

Max nTPM: 80.8
Min nTPM: 70.8
Sample A Male 80.8
Sample B Male 72.5
Sample C Female 70.8
Sample D Female 72.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 10.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.7
67765710 Antisense, RP_040916_01_E03, Mouse strain C57BL/6J (56 days, male) 10.7

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