MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.0 nTPM
HPA Brain:22.5 nTPM
GTEx:7.0 nTPM
FANTOM5:4.0 Scaled Tags Per Million
Pig:5.0 nTPM
Mouse:7.8 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 22.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.0
2586 Male, age 75, left hemisphere 14.1
2828 Female, age 72, unknown 13.7
1827 Male, age 72, unknown 12.2
1833 Male, age 53, unknown 10.6
2411 Female, age 72, unknown 9.3
1870 Female, age 42, unknown 9.2
1830 Male, age 51, unknown 8.7
2666 Male, age 74, left hemisphere 8.7
2019 Male, age 18, unknown 6.6
2219 Male, age 76, both hemispheres 6.6
Dorsal raphe nucleus
nTPM: 16.2
2016 Female, age 72, unknown 22.1
2298 Female, age 72, unknown 21.2
1828 Male, age 53, unknown 16.3
2047 Male, age 72, unknown 13.1
2750 Male, age 76, both hemispheres 8.4
Inferior colliculus
nTPM: 12.9
2849 Male, age 72, unknown 14.5
2097 Female, age 72, unknown 13.5
1848 Female, age 42, unknown 12.1
1890 Male, age 53, unknown 11.3
Median raphe nucleus
nTPM: 7.3
2220 Male, age 76, midline 7.3
Periaquaductal grey, anterior
nTPM: 17.5
1795 Male, age 51, unknown 24.1
1947 Male, age 18, unknown 15.6
2502 Female, age 75, unknown 12.8
Periaquaductal grey, dorsal
nTPM: 19.4
2850 Male, age 76, both hemispheres 23.7
1840 Male, age 53, unknown 21.6
1831 Male, age 72, unknown 18.1
2464 Female, age 72, unknown 14.3
Periaquaductal grey, lateral
nTPM: 22.5
2272 Male, age 74, both hemispheres 26.7
2053 Male, age 18, unknown 20.8
2140 Male, age 76, both hemispheres 20.0
Pretectal area
nTPM: 14.8
2273 Male, age 74, both hemispheres 39.7
2825 Male, age 18, unknown 19.7
2224 Female, age 72, unknown 19.5
2316 Male, age 76, right hemisphere 11.8
1817 Female, age 42, unknown 10.9
1944 Female, age 72, unknown 10.8
1816 Male, age 51, unknown 10.7
2667 Female, age 75, unknown 10.4
1815 Male, age 53, unknown 10.3
2407 Male, age 75, both hemispheres 10.3
2007 Male, age 72, unknown 8.3
Red nucleus
nTPM: 8.8
2725 Female, age 75, unknown 14.0
2823 Male, age 76, right hemisphere 10.3
2503 Female, age 72, unknown 9.5
2227 Male, age 72, unknown 9.1
2769 Male, age 72, unknown 9.0
1904 Male, age 53, unknown 8.8
1821 Female, age 72, unknown 8.5
1954 Female, age 42, unknown 7.8
2785 Male, age 18, unknown 7.7
2588 Male, age 74, left hemisphere 7.5
1865 Male, age 51, unknown 7.2
2584 Male, age 75, left hemisphere 5.9
Substantia nigra
nTPM: 10.3
2590 Female, age 75, unknown 13.0
2699 Male, age 18, unknown 12.6
1851 Male, age 51, unknown 11.4
2409 Female, age 72, unknown 11.1
1916 Female, age 42, unknown 10.9
1889 Female, age 72, unknown 9.6
1941 Male, age 53, unknown 9.1
2583 Male, age 75, right hemisphere 8.9
2241 Male, age 72, unknown 8.3
2665 Male, age 74, both hemispheres 8.1
Superior colliculus
nTPM: 13.2
1995 Male, age 72, unknown 19.6
2587 Male, age 74, left hemisphere 16.6
2664 Male, age 75, both hemispheres 14.2
1796 Male, age 53, unknown 13.3
2261 Male, age 18, unknown 13.2
1913 Female, age 42, unknown 12.5
1839 Male, age 51, unknown 11.6
2087 Female, age 72, unknown 11.3
2668 Female, age 75, unknown 10.5
1895 Male, age 76, right hemisphere 9.4
Ventral tegmental area
nTPM: 10.4
1915 Female, age 42, unknown 13.4
2021 Male, age 53, unknown 12.1
1942 Male, age 51, unknown 11.5
2410 Female, age 72, unknown 9.3
2218 Male, age 76, both hemispheres 8.7
2223 Female, age 72, unknown 7.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.0
Samples: 183

Max nTPM: 36.2
Min nTPM: 0.4
Std nTPM: 5.2
Median nTPM: 6.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 36.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 31.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 28.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 28.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 20.5
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 18.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 17.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 16.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 16.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 15.5
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 15.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 4.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.0
FF:10158-103A5 76 years, female 4.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 5.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.3
Samples: 4

Max nTPM: 4.5
Min nTPM: 2.6
Sample A Female 3.4
Sample B Female 2.8
Sample C Male 4.5
Sample D Male 2.6
Midbrain
nTPM: 2.9
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.4
Sample A Female 3.1
Sample B Female 2.4
Sample C Male 3.0
Sample D Male 2.9
Periaqueductal gray
nTPM: 5.0
Samples: 3

Max nTPM: 6.4
Min nTPM: 3.9
Sample B Female 3.9
Sample C Male 6.4
Sample D Male 4.8
Superior colliculi
nTPM: 2.5
Samples: 4

Max nTPM: 4.2
Min nTPM: 1.8
Sample A Female 1.8
Sample B Female 4.2
Sample C Male 2.1
Sample D Male 1.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.8
Samples: 4

Max nTPM: 9.1
Min nTPM: 6.7
Sample A Male 9.1
Sample B Male 7.2
Sample C Female 6.7
Sample D Female 8.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
70525805 Antisense, RP_050317_04_D03, Mouse strain C57BL/6J (56 days, male) 0.3
74047789 Antisense, RP_051214_02_A05, Mouse strain C57BL/6J (56 days, male) 0.2

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