We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SAT1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SAT1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:259.9 nTPM
HPA Brain:69.2 nTPM
GTEx:259.9 nTPM
FANTOM5:1112.9 Scaled Tags Per Million
Pig:293.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 59.2
2048 Male, age 55, midline 74.6
1981 Female, age 72, midline 67.9
2194 Female, age 79, both hemispheres 57.0
2816 Male, age 47, midline 51.0
2565 Male, age 75, midline 45.3
Cervical spinal cord, dorsal horn
nTPM: 63.9
2069 Male, age 47, both hemispheres 74.1
2173 Female, age 72, unknown 68.7
1877 Male, age 55, unknown 64.3
2721 Male, age 90, both hemispheres 63.4
2297 Male, age 75, both hemispheres 60.5
2296 Male, age 66, both hemispheres 52.4
Cervical spinal cord, ventral horn
nTPM: 69.2
2098 Female, age 72, unknown 108.9
2809 Male, age 90, both hemispheres 95.6
2295 Male, age 66, both hemispheres 64.5
2480 Male, age 75, both hemispheres 51.6
2068 Male, age 55, unknown 48.9
2820 Female, age 79, both hemispheres 45.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

259.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 259.9
Samples: 204

Max nTPM: 917.1
Min nTPM: 71.1
Std nTPM: 152.0
Median nTPM: 216.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 917.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 902.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 901.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 857.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 822.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 775.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 627.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 600.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 593.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 577.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 512.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 496.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 493.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 490.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 470.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 460.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 457.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 451.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 451.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 448.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 442.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 425.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 422.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 414.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 404.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 400.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 399.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 398.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 393.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 389.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 382.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 371.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 368.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 364.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 356.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 353.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 352.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 348.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 348.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 347.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 339.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 338.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 335.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 334.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 331.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 328.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 327.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 326.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 325.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 320.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 316.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 312.6
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 311.6
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 309.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 309.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 307.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 305.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 301.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 297.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 294.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 290.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 290.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 288.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 288.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 284.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 281.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 281.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 273.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 272.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 267.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 266.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 265.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 261.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 260.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 260.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 259.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 256.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 254.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 253.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 251.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 248.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 247.4
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 245.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 245.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 242.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 242.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 239.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 239.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 238.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 237.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 235.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 231.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 229.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 229.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 228.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 227.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 227.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 227.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 227.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 219.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 218.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 217.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 214.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 211.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 211.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 209.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 208.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 202.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 201.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 201.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 200.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 199.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 199.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 197.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 197.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 196.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 196.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 195.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 194.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 194.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 191.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 190.3
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 189.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 188.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 186.5
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 185.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 185.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 184.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 182.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 182.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 181.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 181.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 181.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 180.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 179.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 179.1
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 178.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 177.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 174.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 174.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 174.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 174.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 173.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 171.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 171.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 170.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 170.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 170.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 169.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 169.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 168.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 166.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 164.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 162.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 159.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 154.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 154.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 154.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 153.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 152.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 149.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 147.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 146.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 144.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 143.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 143.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 143.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 142.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 142.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 142.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 142.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 141.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 140.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 139.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 139.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 137.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 134.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 133.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 132.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 132.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 132.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 131.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 131.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 126.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 124.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 122.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 122.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 119.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 119.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 117.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 116.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 113.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 112.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 108.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 107.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 105.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 105.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 105.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 104.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 104.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 103.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 95.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 88.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 71.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1112.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1112.9
FF:10181-103D1 60 years, female 1582.4
FF:10159-103A6 76 years, female 643.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

293.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 293.5
Samples: 4

Max nTPM: 450.7
Min nTPM: 139.6
Sample A Female 139.6
Sample B Female 354.2
Sample C Male 450.7
Sample D Male 229.5
Ventral spinal cord
nTPM: 203.9
Samples: 4

Max nTPM: 253.7
Min nTPM: 141.7
Sample A Female 141.7
Sample B Female 189.4
Sample C Male 253.7
Sample D Male 230.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo