MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:205.7 nTPM
HPA Brain:54.3 nTPM
GTEx:205.7 nTPM
FANTOM5:325.0 Scaled Tags Per Million
Pig:196.6 nTPM
Mouse:50.9 nTPM
Allen mouse:3.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 54.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.0
2828 Female, age 72, unknown 42.6
1870 Female, age 42, unknown 42.1
1827 Male, age 72, unknown 38.2
2019 Male, age 18, unknown 38.0
2666 Male, age 74, left hemisphere 37.0
1833 Male, age 53, unknown 32.4
2586 Male, age 75, left hemisphere 30.9
2411 Female, age 72, unknown 30.5
1830 Male, age 51, unknown 29.9
2219 Male, age 76, both hemispheres 18.9
Dorsal raphe nucleus
nTPM: 46.7
2298 Female, age 72, unknown 51.4
2047 Male, age 72, unknown 50.8
2016 Female, age 72, unknown 50.4
1828 Male, age 53, unknown 46.9
2750 Male, age 76, both hemispheres 34.1
Inferior colliculus
nTPM: 45.4
2097 Female, age 72, unknown 54.3
1890 Male, age 53, unknown 50.2
1848 Female, age 42, unknown 41.0
2849 Male, age 72, unknown 36.0
Median raphe nucleus
nTPM: 48.2
2220 Male, age 76, midline 48.2
Periaquaductal grey, anterior
nTPM: 39.5
1795 Male, age 51, unknown 42.0
1947 Male, age 18, unknown 40.9
2502 Female, age 75, unknown 35.6
Periaquaductal grey, dorsal
nTPM: 42.7
2850 Male, age 76, both hemispheres 59.9
1831 Male, age 72, unknown 39.9
1840 Male, age 53, unknown 37.3
2464 Female, age 72, unknown 33.7
Periaquaductal grey, lateral
nTPM: 43.1
2140 Male, age 76, both hemispheres 48.4
2053 Male, age 18, unknown 44.1
2272 Male, age 74, both hemispheres 36.8
Pretectal area
nTPM: 44.4
2407 Male, age 75, both hemispheres 54.8
1817 Female, age 42, unknown 53.4
2224 Female, age 72, unknown 50.4
2667 Female, age 75, unknown 45.4
2007 Male, age 72, unknown 44.3
1816 Male, age 51, unknown 43.7
1944 Female, age 72, unknown 43.7
1815 Male, age 53, unknown 42.6
2316 Male, age 76, right hemisphere 38.2
2825 Male, age 18, unknown 36.1
2273 Male, age 74, both hemispheres 35.2
Red nucleus
nTPM: 44.4
1821 Female, age 72, unknown 57.9
1954 Female, age 42, unknown 49.8
1865 Male, age 51, unknown 49.4
2769 Male, age 72, unknown 47.9
2503 Female, age 72, unknown 46.8
2785 Male, age 18, unknown 45.4
2725 Female, age 75, unknown 42.6
1904 Male, age 53, unknown 41.2
2227 Male, age 72, unknown 40.8
2584 Male, age 75, left hemisphere 40.8
2823 Male, age 76, right hemisphere 37.4
2588 Male, age 74, left hemisphere 32.7
Substantia nigra
nTPM: 54.3
1916 Female, age 42, unknown 68.5
2699 Male, age 18, unknown 61.9
2665 Male, age 74, both hemispheres 57.9
1851 Male, age 51, unknown 57.3
2241 Male, age 72, unknown 56.8
1889 Female, age 72, unknown 50.7
1941 Male, age 53, unknown 50.3
2583 Male, age 75, right hemisphere 48.9
2590 Female, age 75, unknown 46.4
2409 Female, age 72, unknown 44.1
Superior colliculus
nTPM: 41.6
2668 Female, age 75, unknown 52.6
2664 Male, age 75, both hemispheres 52.1
1796 Male, age 53, unknown 46.8
2087 Female, age 72, unknown 45.2
1913 Female, age 42, unknown 40.4
1995 Male, age 72, unknown 39.2
2587 Male, age 74, left hemisphere 38.7
2261 Male, age 18, unknown 34.5
1839 Male, age 51, unknown 34.4
1895 Male, age 76, right hemisphere 31.6
Ventral tegmental area
nTPM: 46.6
1915 Female, age 42, unknown 63.6
1942 Male, age 51, unknown 48.0
2021 Male, age 53, unknown 47.9
2218 Male, age 76, both hemispheres 42.0
2223 Female, age 72, unknown 40.2
2410 Female, age 72, unknown 38.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 205.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 205.7
Samples: 183

Max nTPM: 1286.7
Min nTPM: 80.9
Std nTPM: 113.9
Median nTPM: 189.4
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 1286.7
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 586.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 538.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 457.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 424.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 422.0
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 389.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 381.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 366.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 341.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 332.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 325.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 325.0
FF:10158-103A5 76 years, female 325.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 196.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 196.6
Samples: 4

Max nTPM: 249.7
Min nTPM: 164.5
Sample A Female 188.4
Sample B Female 249.7
Sample C Male 164.5
Sample D Male 183.9
Midbrain
nTPM: 150.4
Samples: 4

Max nTPM: 172.1
Min nTPM: 129.6
Sample A Female 172.1
Sample B Female 163.9
Sample C Male 129.6
Sample D Male 135.9
Periaqueductal gray
nTPM: 156.1
Samples: 3

Max nTPM: 168.0
Min nTPM: 148.7
Sample B Female 148.7
Sample C Male 168.0
Sample D Male 151.5
Superior colliculi
nTPM: 173.4
Samples: 4

Max nTPM: 241.0
Min nTPM: 140.3
Sample A Female 159.2
Sample B Female 241.0
Sample C Male 140.3
Sample D Male 153.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 50.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.9
Samples: 4

Max nTPM: 52.3
Min nTPM: 49.8
Sample A Male 49.8
Sample B Male 50.8
Sample C Female 50.7
Sample D Female 52.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
69873409 Antisense, RP_050512_01_B12, Mouse strain C57BL/6J (56 days, male) 3.1

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