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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:297.4 nTPM
GTEx:297.4 nTPM
FANTOM5:389.5 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA014263Antibody CAB000007
Squamous epithelial cells Not detectedNot detected





VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

297.4
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 297.4
Samples: 170

Max nTPM: 1534.7
Min nTPM: 1.4
Std nTPM: 334.3
Median nTPM: 175.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1534.7
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1495.8
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1436.5
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1352.2
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1303.3
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1100.4
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1099.0
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1091.1
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1080.1
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1069.8
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1055.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 973.1
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 963.3
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 939.4
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 928.6
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 887.6
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 825.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 824.3
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 709.1
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 683.1
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 674.0
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 657.8
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 656.5
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 648.9
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 597.8
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 594.8
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 579.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 549.0
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 540.5
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 488.9
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 486.6
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 476.5
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 458.8
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 457.2
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 449.4
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 445.9
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 442.7
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 441.0
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 435.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 407.8
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 403.2
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 402.8
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 390.0
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 387.9
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 386.3
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 363.7
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 360.2
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 358.9
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 358.4
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 352.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 348.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 339.6
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 328.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 326.4
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 314.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 307.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 305.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 292.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 292.2
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 291.3
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 285.4
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 281.9
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 274.6
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 272.8
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 267.5
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 267.3
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 267.0
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 263.6
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 259.3
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 249.9
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 242.6
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 240.6
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 218.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 217.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 211.0
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 204.8
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 203.5
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 201.4
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 199.5
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 188.1
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 187.4
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 185.6
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 182.8
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 179.0
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 176.9
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 174.4
GTEX-16NPV-2526-SM-6M483 50-59 years, female 168.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 166.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 166.1
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 164.2
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 156.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 154.3
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 153.0
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 152.5
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 151.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 150.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 150.4
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 146.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 144.6
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 143.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 134.3
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 124.3
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 123.1
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 120.0
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 115.9
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 114.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 114.1
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 109.1
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 107.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 106.8
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 104.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 102.3
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 98.7
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 97.1
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 96.7
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 85.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 82.9
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 80.6
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 79.6
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 79.4
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 77.1
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 75.1
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 73.1
GTEX-1C475-0526-SM-793AC 40-49 years, female 73.0
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 69.5
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 68.0
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 67.7
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 64.4
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 64.2
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 63.9
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 63.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 62.9
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 60.5
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 56.3
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 52.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 52.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 50.3
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 48.2
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 46.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 44.5
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 40.2
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 38.2
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 28.0
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 23.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 23.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 22.4
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 22.1
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 19.9
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 19.0
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 16.8
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 16.5
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 14.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 14.2
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 13.9
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 12.8
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 11.9
GTEX-11I78-2026-SM-5987C 50-59 years, female 10.9
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 10.6
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 10.4
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 7.6
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 7.4
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 7.0
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 5.9
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 4.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 4.4
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 3.9
GTEX-14PKU-1326-SM-6871B 40-49 years, female 3.8
GTEX-S341-1226-SM-4AD5S 40-49 years, female 3.7
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 3.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1.4
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

389.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 389.5
FF:10204-103F6 68 years, female 389.5

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