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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
79.5
Sample id
Sample description
nTPM
Amygdala nTPM: 79.5
2814
Male, age 76, right hemisphere
105.9
2695
Female, age 67, right hemisphere
87.1
1987
Female, age 91, left hemisphere
85.2
2517
Female, age 94, left hemisphere
65.3
2514
Male, age 75, right hemisphere
53.9
Basal amygdala nTPM: 66.2
1955
Male, age 76, both hemispheres
83.2
2243
Female, age 91, right hemisphere
79.3
2685
Female, age 94, left hemisphere
71.3
2110
Male, age 80, left hemisphere
58.9
2827
Female, age 67, right hemisphere
53.4
2609
Male, age 75, right hemisphere
51.3
Central amygdala nTPM: 77.0
1905
Male, age 76, both hemispheres
112.7
2515
Male, age 75, right hemisphere
77.1
2701
Female, age 91, right hemisphere
69.9
2239
Male, age 80, left hemisphere
67.9
2826
Female, age 94, left hemisphere
57.2
Corticomedial amygdala nTPM: 71.5
2240
Male, age 76, both hemispheres
86.6
2429
Female, age 94, left hemisphere
86.4
2242
Female, age 91, right hemisphere
77.1
2829
Male, age 80, left hemisphere
66.1
2535
Female, age 67, right hemisphere
59.8
2428
Male, age 75, right hemisphere
52.8
Lateral amygdala nTPM: 60.1
1883
Male, age 76, both hemispheres
96.6
2534
Female, age 94, left hemisphere
67.7
2255
Female, age 91, right hemisphere
66.3
2516
Male, age 75, right hemisphere
49.0
2256
Male, age 80, left hemisphere
45.9
2830
Female, age 67, right hemisphere
34.8
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.0
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 24.0
Samples: 181
Max nTPM: 72.7
Min nTPM: 7.7
Std nTPM: 8.1
Median nTPM: 23.1
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
72.7
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
49.5
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
44.9
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
43.7
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
42.5
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
42.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
39.0
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
38.7
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
36.7
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
36.5
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
36.0
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
35.9
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
35.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
35.0
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
34.8
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
34.0
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
33.9
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
33.9
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
33.9
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
33.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
33.6
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
33.3
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
32.8
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
32.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
32.5
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
32.0
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
32.0
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
31.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
31.2
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
30.9
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
30.6
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
30.6
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
30.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
30.0
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
29.9
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
29.9
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
29.7
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
29.5
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
29.4
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
29.4
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
28.9
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
28.5
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
28.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
28.1
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
28.0
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
27.9
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
27.9
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
27.8
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
27.7
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
27.7
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
27.6
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
27.3
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
27.2
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
27.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
27.0
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
26.7
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
26.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
26.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
26.5
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
26.3
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
26.3
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
26.2
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
26.2
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
26.0
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
25.9
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
25.6
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
25.6
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
25.5
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
25.2
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
25.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
25.1
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
25.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
24.9
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
24.8
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
24.5
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
24.3
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
24.1
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
24.0
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
24.0
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
23.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
23.9
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
23.6
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
23.5
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
23.5
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
23.5
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
23.4
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
23.3
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
23.3
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
23.2
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
23.2
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
23.1
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
23.1
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
22.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
22.8
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
22.8
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
22.5
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
22.4
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
22.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
22.0
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
22.0
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
21.9
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
21.8
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
21.8
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
21.7
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
21.7
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
21.4
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
21.3
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
21.2
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
21.2
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
21.1
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
21.0
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
20.7
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
20.7
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
20.7
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
20.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
20.5
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
20.5
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
20.5
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
20.3
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
20.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
20.2
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
20.1
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
20.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
19.9
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
19.9
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
19.8
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
19.7
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
19.7
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
19.7
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
19.5
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
19.4
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
19.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
19.3
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
19.1
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
18.5
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
18.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
18.1
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
18.1
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
18.0
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
18.0
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
17.7
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
17.7
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
17.6
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
17.6
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
17.5
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
17.4
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
17.3
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
17.1
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
16.9
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
16.8
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
16.8
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
16.7
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
16.6
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
16.6
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
16.6
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
16.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
16.5
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
16.4
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
16.1
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
16.1
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
16.1
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
16.0
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
15.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
15.5
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
15.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
14.9
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
14.9
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
14.8
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
14.6
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
14.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
13.8
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
12.6
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
12.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
12.4
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
12.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
12.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
12.1
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
12.0
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
11.8
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
8.6
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
7.7
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
74.7
Pig sample
Sample description
nTPM
Amygdala nTPM: 74.7
Samples: 4
Max nTPM: 101.1
Min nTPM: 52.3
Sample A
Female
101.1
Sample B
Female
52.3
Sample C
Male
67.5
Sample D
Male
78.0
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
111.9
Mouse sample
Sample description
nTPM
Amygdala nTPM: 111.9
Samples: 4
Max nTPM: 132.0
Min nTPM: 97.5
Sample A
Male
132.0
Sample B
Male
106.2
Sample C
Female
97.5
Sample D
Female
111.9
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
