MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.4 nTPM
HPA Brain:14.5 nTPM
GTEx:19.4 nTPM
FANTOM5:64.4 Scaled Tags Per Million
Pig:48.0 nTPM
Mouse:9.3 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 14.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.1
2586 Male, age 75, left hemisphere 14.4
1870 Female, age 42, unknown 14.1
1830 Male, age 51, unknown 13.7
2019 Male, age 18, unknown 13.0
1833 Male, age 53, unknown 12.6
2411 Female, age 72, unknown 12.4
2828 Female, age 72, unknown 10.7
1827 Male, age 72, unknown 10.6
2666 Male, age 74, left hemisphere 10.6
2219 Male, age 76, both hemispheres 8.4
Dorsal raphe nucleus
nTPM: 10.3
2750 Male, age 76, both hemispheres 12.7
1828 Male, age 53, unknown 10.2
2047 Male, age 72, unknown 10.0
2298 Female, age 72, unknown 10.0
2016 Female, age 72, unknown 8.7
Inferior colliculus
nTPM: 10.2
2097 Female, age 72, unknown 10.8
1848 Female, age 42, unknown 10.5
1890 Male, age 53, unknown 10.1
2849 Male, age 72, unknown 9.2
Median raphe nucleus
nTPM: 14.1
2220 Male, age 76, midline 14.1
Periaquaductal grey, anterior
nTPM: 11.0
2502 Female, age 75, unknown 12.8
1947 Male, age 18, unknown 11.4
1795 Male, age 51, unknown 8.7
Periaquaductal grey, dorsal
nTPM: 9.1
2464 Female, age 72, unknown 10.4
1831 Male, age 72, unknown 9.0
2850 Male, age 76, both hemispheres 8.8
1840 Male, age 53, unknown 8.1
Periaquaductal grey, lateral
nTPM: 9.5
2053 Male, age 18, unknown 10.7
2140 Male, age 76, both hemispheres 8.9
2272 Male, age 74, both hemispheres 8.8
Pretectal area
nTPM: 11.3
1817 Female, age 42, unknown 15.5
1815 Male, age 53, unknown 14.8
2007 Male, age 72, unknown 13.7
1944 Female, age 72, unknown 12.9
1816 Male, age 51, unknown 11.4
2407 Male, age 75, both hemispheres 10.1
2825 Male, age 18, unknown 9.8
2316 Male, age 76, right hemisphere 9.2
2273 Male, age 74, both hemispheres 8.9
2224 Female, age 72, unknown 8.8
2667 Female, age 75, unknown 8.6
Red nucleus
nTPM: 14.5
1904 Male, age 53, unknown 16.7
1865 Male, age 51, unknown 16.4
1821 Female, age 72, unknown 16.3
1954 Female, age 42, unknown 16.3
2503 Female, age 72, unknown 14.9
2785 Male, age 18, unknown 14.9
2769 Male, age 72, unknown 14.7
2227 Male, age 72, unknown 13.5
2725 Female, age 75, unknown 13.3
2584 Male, age 75, left hemisphere 12.8
2823 Male, age 76, right hemisphere 11.9
2588 Male, age 74, left hemisphere 11.8
Substantia nigra
nTPM: 10.6
2409 Female, age 72, unknown 14.2
2583 Male, age 75, right hemisphere 12.6
1889 Female, age 72, unknown 11.8
1851 Male, age 51, unknown 10.6
2590 Female, age 75, unknown 10.3
2665 Male, age 74, both hemispheres 9.9
1941 Male, age 53, unknown 9.7
2241 Male, age 72, unknown 9.5
1916 Female, age 42, unknown 9.2
2699 Male, age 18, unknown 7.7
Superior colliculus
nTPM: 11.7
1913 Female, age 42, unknown 14.8
2668 Female, age 75, unknown 13.8
1995 Male, age 72, unknown 13.6
2261 Male, age 18, unknown 12.9
2587 Male, age 74, left hemisphere 11.8
2087 Female, age 72, unknown 11.7
1796 Male, age 53, unknown 10.4
1839 Male, age 51, unknown 9.5
2664 Male, age 75, both hemispheres 9.5
1895 Male, age 76, right hemisphere 9.2
Ventral tegmental area
nTPM: 10.3
2223 Female, age 72, unknown 12.5
1942 Male, age 51, unknown 11.0
2410 Female, age 72, unknown 10.9
2218 Male, age 76, both hemispheres 10.3
1915 Female, age 42, unknown 8.8
2021 Male, age 53, unknown 8.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 19.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.4
Samples: 183

Max nTPM: 45.0
Min nTPM: 10.6
Std nTPM: 5.9
Median nTPM: 18.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 45.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 42.7
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 42.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 41.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 36.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 35.3
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 34.9
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 32.6
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 29.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 29.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 28.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 64.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.4
FF:10158-103A5 76 years, female 64.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 48.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.7
Samples: 4

Max nTPM: 60.7
Min nTPM: 40.9
Sample A Female 44.4
Sample B Female 40.9
Sample C Male 40.9
Sample D Male 60.7
Midbrain
nTPM: 48.0
Samples: 4

Max nTPM: 81.2
Min nTPM: 31.0
Sample A Female 81.2
Sample B Female 44.3
Sample C Male 35.4
Sample D Male 31.0
Periaqueductal gray
nTPM: 36.3
Samples: 3

Max nTPM: 41.4
Min nTPM: 32.7
Sample B Female 41.4
Sample C Male 32.7
Sample D Male 34.9
Superior colliculi
nTPM: 43.4
Samples: 4

Max nTPM: 45.9
Min nTPM: 41.5
Sample A Female 45.9
Sample B Female 43.7
Sample C Male 42.6
Sample D Male 41.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.3
Samples: 4

Max nTPM: 10.1
Min nTPM: 8.3
Sample A Male 10.1
Sample B Male 8.3
Sample C Female 9.9
Sample D Female 8.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69885636 Antisense, RP_050512_03_A09, Mouse strain C57BL/6J (56 days, male) 0.4

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