MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.8 nTPM
HPA Brain:16.0 nTPM
GTEx:30.8 nTPM
FANTOM5:47.4 Scaled Tags Per Million
Pig:32.8 nTPM
Mouse:12.1 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 16.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.0
2019 Male, age 18, unknown 30.9
2586 Male, age 75, left hemisphere 24.8
2666 Male, age 74, left hemisphere 22.5
1830 Male, age 51, unknown 16.2
1833 Male, age 53, unknown 12.5
2828 Female, age 72, unknown 11.9
2411 Female, age 72, unknown 11.4
1827 Male, age 72, unknown 11.1
2219 Male, age 76, both hemispheres 11.1
1870 Female, age 42, unknown 8.0
Dorsal raphe nucleus
nTPM: 13.2
2298 Female, age 72, unknown 15.4
2016 Female, age 72, unknown 13.7
2750 Male, age 76, both hemispheres 12.8
1828 Male, age 53, unknown 12.3
2047 Male, age 72, unknown 11.7
Inferior colliculus
nTPM: 10.2
1890 Male, age 53, unknown 12.8
2097 Female, age 72, unknown 10.6
2849 Male, age 72, unknown 9.4
1848 Female, age 42, unknown 8.1
Median raphe nucleus
nTPM: 12.3
2220 Male, age 76, midline 12.3
Periaquaductal grey, anterior
nTPM: 12.4
2502 Female, age 75, unknown 13.2
1795 Male, age 51, unknown 13.1
1947 Male, age 18, unknown 10.9
Periaquaductal grey, dorsal
nTPM: 11.6
1831 Male, age 72, unknown 14.8
2850 Male, age 76, both hemispheres 11.7
2464 Female, age 72, unknown 10.1
1840 Male, age 53, unknown 9.7
Periaquaductal grey, lateral
nTPM: 10.8
2272 Male, age 74, both hemispheres 11.5
2053 Male, age 18, unknown 10.8
2140 Male, age 76, both hemispheres 10.3
Pretectal area
nTPM: 13.8
1817 Female, age 42, unknown 24.3
2007 Male, age 72, unknown 21.7
1816 Male, age 51, unknown 17.9
2407 Male, age 75, both hemispheres 16.2
1944 Female, age 72, unknown 14.0
1815 Male, age 53, unknown 11.2
2316 Male, age 76, right hemisphere 10.6
2224 Female, age 72, unknown 10.0
2273 Male, age 74, both hemispheres 9.5
2825 Male, age 18, unknown 8.8
2667 Female, age 75, unknown 8.0
Red nucleus
nTPM: 13.1
2785 Male, age 18, unknown 22.9
2584 Male, age 75, left hemisphere 19.4
2725 Female, age 75, unknown 14.3
2823 Male, age 76, right hemisphere 12.8
2769 Male, age 72, unknown 12.5
1904 Male, age 53, unknown 11.9
1865 Male, age 51, unknown 11.6
2503 Female, age 72, unknown 11.4
2227 Male, age 72, unknown 11.2
2588 Male, age 74, left hemisphere 10.9
1821 Female, age 72, unknown 10.0
1954 Female, age 42, unknown 8.5
Substantia nigra
nTPM: 15.1
2665 Male, age 74, both hemispheres 26.8
2583 Male, age 75, right hemisphere 24.9
2590 Female, age 75, unknown 19.0
1941 Male, age 53, unknown 14.0
1851 Male, age 51, unknown 13.7
2409 Female, age 72, unknown 12.7
1889 Female, age 72, unknown 11.6
2241 Male, age 72, unknown 10.6
2699 Male, age 18, unknown 9.7
1916 Female, age 42, unknown 8.5
Superior colliculus
nTPM: 13.9
2664 Male, age 75, both hemispheres 20.1
1913 Female, age 42, unknown 17.3
1995 Male, age 72, unknown 15.2
2587 Male, age 74, left hemisphere 15.2
2087 Female, age 72, unknown 14.4
2668 Female, age 75, unknown 13.3
1796 Male, age 53, unknown 12.6
1839 Male, age 51, unknown 11.8
1895 Male, age 76, right hemisphere 10.7
2261 Male, age 18, unknown 8.4
Ventral tegmental area
nTPM: 12.2
2021 Male, age 53, unknown 18.6
2218 Male, age 76, both hemispheres 12.3
2223 Female, age 72, unknown 12.0
1915 Female, age 42, unknown 10.6
2410 Female, age 72, unknown 10.0
1942 Male, age 51, unknown 9.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 30.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.8
Samples: 183

Max nTPM: 93.2
Min nTPM: 6.4
Std nTPM: 16.1
Median nTPM: 27.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 93.2
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 93.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 75.1
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 74.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 74.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 72.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 66.5
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 63.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 63.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 62.3
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 61.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 47.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.4
FF:10158-103A5 76 years, female 47.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 32.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.8
Samples: 4

Max nTPM: 44.8
Min nTPM: 26.1
Sample A Female 33.0
Sample B Female 44.8
Sample C Male 27.2
Sample D Male 26.1
Midbrain
nTPM: 26.2
Samples: 4

Max nTPM: 39.2
Min nTPM: 15.5
Sample A Female 39.2
Sample B Female 33.7
Sample C Male 15.5
Sample D Male 16.5
Periaqueductal gray
nTPM: 31.4
Samples: 3

Max nTPM: 37.3
Min nTPM: 26.9
Sample B Female 30.0
Sample C Male 37.3
Sample D Male 26.9
Superior colliculi
nTPM: 26.8
Samples: 4

Max nTPM: 34.9
Min nTPM: 19.1
Sample A Female 30.7
Sample B Female 34.9
Sample C Male 19.1
Sample D Male 22.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 12.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.1
Samples: 4

Max nTPM: 13.6
Min nTPM: 9.8
Sample A Male 13.5
Sample B Male 9.8
Sample C Female 11.6
Sample D Female 13.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
77791996 Antisense, RP_070208_04_C08, Mouse strain C57BL/6J (56 days, male) 0.2
67979031 Antisense, RP_040923_02_A12, Mouse strain C57BL/6J (56 days, male) 0.1

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