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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:51.5 nTPM
GTEx:51.5 nTPM
FANTOM5:99.6 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA004832
Squamous epithelial cells Not detected



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 51.5
Samples: 170

Max nTPM: 112.4
Min nTPM: 14.9
Std nTPM: 20.6
Median nTPM: 48.2
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 112.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 112.1
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 99.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 98.5
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 97.9
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 97.2
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 94.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 91.8
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 88.9
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 88.1
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 87.5
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 87.1
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 86.6
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 86.1
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 85.6
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 85.3
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 84.6
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 82.9
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 82.9
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 82.7
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 76.7
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 76.2
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 76.2
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 76.0
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 75.7
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 75.6
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 75.0
GTEX-QCQG-1226-SM-48U23 50-59 years, female 74.7
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 74.4
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 74.4
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 72.4
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 71.7
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 71.4
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 70.8
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 70.3
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 69.2
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 68.7
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 67.5
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 67.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 66.1
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 64.5
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 64.4
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 63.8
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 62.4
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 61.3
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 60.7
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 60.3
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 60.1
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 59.7
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 59.6
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 59.5
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 58.7
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 58.4
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 57.6
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 57.6
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 57.4
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 57.2
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 56.8
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 56.8
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 56.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 56.3
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 55.6
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 54.7
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 54.5
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 54.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 54.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 53.6
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 52.9
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 52.7
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 52.2
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 52.0
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 51.0
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 50.7
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 50.3
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 50.0
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 49.8
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 49.6
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 49.5
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 49.1
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 48.9
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 48.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 48.4
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 48.4
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 48.4
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 48.3
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 48.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 48.0
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 47.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 47.4
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 47.3
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 46.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 46.7
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 45.8
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 45.3
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 45.2
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 45.1
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 44.7
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 44.5
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 44.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 44.3
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 44.2
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 43.8
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 43.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 42.8
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 42.7
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 42.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 42.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 41.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 41.8
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 41.2
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 40.4
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 40.4
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 39.7
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 39.6
GTEX-14PKU-1326-SM-6871B 40-49 years, female 39.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 39.6
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 39.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 38.8
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 38.4
GTEX-16NPV-2526-SM-6M483 50-59 years, female 38.1
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 37.9
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 37.0
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 36.7
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 36.4
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 36.4
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 36.2
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 36.2
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 36.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 35.9
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 35.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 35.3
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 34.3
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 34.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 34.2
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 34.1
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 33.9
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 33.8
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 33.6
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 33.2
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 32.6
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 32.5
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 32.1
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 31.8
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 31.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 30.5
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 30.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 30.2
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 29.8
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 29.8
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 29.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 29.3
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 29.3
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 28.6
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 27.7
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 26.8
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 26.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 26.7
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 26.3
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 25.9
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 25.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 25.0
GTEX-S341-1226-SM-4AD5S 40-49 years, female 24.6
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 23.0
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 23.0
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 22.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 22.0
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 19.1
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 17.9
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 16.4
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 14.9
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

99.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 99.6
FF:10204-103F6 68 years, female 99.6

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