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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:171.5 nTPM
HPA Brain:288.3 nTPM
GTEx:171.5 nTPM
FANTOM5:211.9 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

288.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 281.5
2194 Female, age 79, both hemispheres 331.5
2565 Male, age 75, midline 313.8
1981 Female, age 72, midline 292.3
2816 Male, age 47, midline 275.2
2048 Male, age 55, midline 194.8
Cervical spinal cord, dorsal horn
nTPM: 260.5
2297 Male, age 75, both hemispheres 283.4
2069 Male, age 47, both hemispheres 281.0
2296 Male, age 66, both hemispheres 276.5
2173 Female, age 72, unknown 253.6
2721 Male, age 90, both hemispheres 234.5
1877 Male, age 55, unknown 234.2
Cervical spinal cord, ventral horn
nTPM: 288.3
2068 Male, age 55, unknown 376.5
2295 Male, age 66, both hemispheres 316.7
2480 Male, age 75, both hemispheres 279.4
2820 Female, age 79, both hemispheres 269.4
2809 Male, age 90, both hemispheres 255.6
2098 Female, age 72, unknown 232.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

171.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 171.5
Samples: 204

Max nTPM: 449.0
Min nTPM: 69.6
Std nTPM: 63.0
Median nTPM: 157.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 449.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 397.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 381.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 339.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 315.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 314.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 312.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 308.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 306.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 304.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 294.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 293.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 284.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 276.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 275.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 274.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 271.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 268.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 267.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 265.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 262.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 261.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 240.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 240.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 237.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 237.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 232.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 231.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 228.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 228.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 227.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 225.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 225.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 225.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 224.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 223.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 222.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 221.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 220.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 218.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 217.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 215.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 214.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 213.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 212.9
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 211.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 204.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 204.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 202.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 202.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 202.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 200.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 199.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 198.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 198.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 197.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 197.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 197.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 197.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 197.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 196.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 195.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 192.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 192.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 191.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 188.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 188.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 187.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 187.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 186.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 184.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 183.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 179.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 179.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 178.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 178.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 178.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 178.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 176.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 175.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 174.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 174.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 172.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 172.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 171.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 169.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 169.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 169.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 167.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 167.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 165.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 164.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 164.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 164.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 163.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 162.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 160.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 159.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 159.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 157.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 157.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 157.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 157.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 157.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 156.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 156.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 156.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 156.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 156.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 155.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 155.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 155.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 155.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 155.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 154.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 154.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 153.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 152.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 150.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 149.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 149.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 148.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 145.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 145.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 145.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 144.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 144.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 143.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 143.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 143.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 143.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 142.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 140.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 140.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 139.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 139.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 138.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 138.2
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 137.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 136.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 135.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 134.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 134.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 133.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 133.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 132.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 132.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 131.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 130.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 130.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 130.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 130.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 129.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 128.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 127.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 127.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 127.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 126.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 124.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 122.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 122.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 121.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 121.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 120.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 119.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 118.3
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 117.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 116.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 115.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 115.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 114.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 113.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 113.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 112.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 112.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 111.1
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 107.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 105.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 104.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 104.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 104.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 103.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 102.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 100.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 100.3
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 98.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 97.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 96.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 96.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 95.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 94.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 94.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 94.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 92.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 90.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 89.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 87.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 87.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 84.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 81.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 78.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 75.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 74.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 69.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

211.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 211.9
FF:10181-103D1 60 years, female 260.7
FF:10159-103A6 76 years, female 163.2

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