MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.4 nTPM
HPA Brain:198.3 nTPM
GTEx:73.4 nTPM
FANTOM5:11.2 Scaled Tags Per Million
Pig:407.8 nTPM
Mouse:151.6 nTPM
Allen mouse:17.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 198.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.1
2219 Male, age 76, both hemispheres 113.6
2411 Female, age 72, unknown 109.7
1827 Male, age 72, unknown 104.0
1870 Female, age 42, unknown 86.5
1833 Male, age 53, unknown 81.4
2828 Female, age 72, unknown 72.6
2586 Male, age 75, left hemisphere 67.0
1830 Male, age 51, unknown 66.9
2019 Male, age 18, unknown 64.4
2666 Male, age 74, left hemisphere 55.4
Dorsal raphe nucleus
nTPM: 133.3
2298 Female, age 72, unknown 198.7
2047 Male, age 72, unknown 160.0
2750 Male, age 76, both hemispheres 133.5
1828 Male, age 53, unknown 92.2
2016 Female, age 72, unknown 82.4
Inferior colliculus
nTPM: 90.7
2849 Male, age 72, unknown 107.3
2097 Female, age 72, unknown 97.9
1848 Female, age 42, unknown 87.3
1890 Male, age 53, unknown 70.1
Median raphe nucleus
nTPM: 198.3
2220 Male, age 76, midline 198.3
Periaquaductal grey, anterior
nTPM: 155.8
2502 Female, age 75, unknown 230.2
1795 Male, age 51, unknown 123.8
1947 Male, age 18, unknown 113.3
Periaquaductal grey, dorsal
nTPM: 111.8
1840 Male, age 53, unknown 143.4
2850 Male, age 76, both hemispheres 126.8
2464 Female, age 72, unknown 103.0
1831 Male, age 72, unknown 74.0
Periaquaductal grey, lateral
nTPM: 118.7
2272 Male, age 74, both hemispheres 149.0
2140 Male, age 76, both hemispheres 114.0
2053 Male, age 18, unknown 93.2
Pretectal area
nTPM: 115.6
2667 Female, age 75, unknown 218.3
2224 Female, age 72, unknown 172.9
2007 Male, age 72, unknown 114.2
1816 Male, age 51, unknown 112.5
2825 Male, age 18, unknown 111.9
1944 Female, age 72, unknown 106.7
2273 Male, age 74, both hemispheres 106.2
1815 Male, age 53, unknown 93.1
1817 Female, age 42, unknown 90.6
2407 Male, age 75, both hemispheres 73.6
2316 Male, age 76, right hemisphere 71.7
Red nucleus
nTPM: 45.8
2584 Male, age 75, left hemisphere 82.3
2785 Male, age 18, unknown 67.3
2769 Male, age 72, unknown 49.8
2227 Male, age 72, unknown 48.4
1821 Female, age 72, unknown 46.0
1954 Female, age 42, unknown 45.5
1904 Male, age 53, unknown 38.0
2725 Female, age 75, unknown 36.7
2503 Female, age 72, unknown 34.7
2588 Male, age 74, left hemisphere 34.4
1865 Male, age 51, unknown 33.5
2823 Male, age 76, right hemisphere 32.8
Substantia nigra
nTPM: 85.6
2665 Male, age 74, both hemispheres 134.6
1916 Female, age 42, unknown 125.6
1941 Male, age 53, unknown 100.6
1851 Male, age 51, unknown 99.5
1889 Female, age 72, unknown 98.6
2241 Male, age 72, unknown 83.9
2699 Male, age 18, unknown 81.2
2409 Female, age 72, unknown 60.0
2590 Female, age 75, unknown 42.5
2583 Male, age 75, right hemisphere 29.3
Superior colliculus
nTPM: 78.1
1796 Male, age 53, unknown 104.6
2664 Male, age 75, both hemispheres 99.8
2261 Male, age 18, unknown 93.2
1839 Male, age 51, unknown 90.6
1895 Male, age 76, right hemisphere 89.4
2087 Female, age 72, unknown 84.1
2587 Male, age 74, left hemisphere 80.7
2668 Female, age 75, unknown 52.1
1913 Female, age 42, unknown 46.7
1995 Male, age 72, unknown 39.5
Ventral tegmental area
nTPM: 115.9
2218 Male, age 76, both hemispheres 154.2
1942 Male, age 51, unknown 132.5
1915 Female, age 42, unknown 125.4
2021 Male, age 53, unknown 110.4
2410 Female, age 72, unknown 99.5
2223 Female, age 72, unknown 73.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 73.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.4
Samples: 183

Max nTPM: 290.7
Min nTPM: 1.7
Std nTPM: 66.1
Median nTPM: 53.6
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 290.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 270.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 243.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 234.5
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 222.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 220.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 218.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 215.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 210.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 204.1
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 202.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 11.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.2
FF:10158-103A5 76 years, female 11.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 407.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 340.2
Samples: 4

Max nTPM: 646.5
Min nTPM: 74.0
Sample A Female 646.5
Sample B Female 258.8
Sample C Male 381.6
Sample D Male 74.0
Midbrain
nTPM: 368.7
Samples: 4

Max nTPM: 539.5
Min nTPM: 145.9
Sample A Female 145.9
Sample B Female 333.7
Sample C Male 455.7
Sample D Male 539.5
Periaqueductal gray
nTPM: 407.8
Samples: 3

Max nTPM: 517.7
Min nTPM: 348.4
Sample B Female 348.4
Sample C Male 517.7
Sample D Male 357.2
Superior colliculi
nTPM: 375.1
Samples: 4

Max nTPM: 579.5
Min nTPM: 132.2
Sample A Female 579.5
Sample B Female 132.2
Sample C Male 399.4
Sample D Male 389.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 151.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 151.6
Samples: 4

Max nTPM: 171.8
Min nTPM: 138.9
Sample A Male 171.8
Sample B Male 138.9
Sample C Female 139.9
Sample D Female 155.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 17.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.4
75831782 Antisense, RP_060601_02_F07, Mouse strain C57BL/6J (56 days, male) 17.4

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