MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.0 nTPM
HPA Brain:72.4 nTPM
GTEx:53.0 nTPM
FANTOM5:27.2 Scaled Tags Per Million
Pig:45.3 nTPM
Mouse:7.9 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 72.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.8
2586 Male, age 75, left hemisphere 72.0
2219 Male, age 76, both hemispheres 57.3
2828 Female, age 72, unknown 56.5
1827 Male, age 72, unknown 56.3
2019 Male, age 18, unknown 52.6
2411 Female, age 72, unknown 51.4
2666 Male, age 74, left hemisphere 44.2
1870 Female, age 42, unknown 42.4
1833 Male, age 53, unknown 39.9
1830 Male, age 51, unknown 35.6
Dorsal raphe nucleus
nTPM: 46.1
2298 Female, age 72, unknown 60.1
1828 Male, age 53, unknown 44.5
2750 Male, age 76, both hemispheres 43.5
2047 Male, age 72, unknown 41.4
2016 Female, age 72, unknown 40.8
Inferior colliculus
nTPM: 43.4
2097 Female, age 72, unknown 50.6
1848 Female, age 42, unknown 45.7
2849 Male, age 72, unknown 40.3
1890 Male, age 53, unknown 37.1
Median raphe nucleus
nTPM: 45.8
2220 Male, age 76, midline 45.8
Periaquaductal grey, anterior
nTPM: 72.4
2502 Female, age 75, unknown 84.4
1795 Male, age 51, unknown 73.5
1947 Male, age 18, unknown 59.3
Periaquaductal grey, dorsal
nTPM: 39.2
1840 Male, age 53, unknown 48.5
2464 Female, age 72, unknown 41.6
1831 Male, age 72, unknown 36.4
2850 Male, age 76, both hemispheres 30.4
Periaquaductal grey, lateral
nTPM: 39.7
2053 Male, age 18, unknown 40.4
2272 Male, age 74, both hemispheres 40.4
2140 Male, age 76, both hemispheres 38.5
Pretectal area
nTPM: 52.8
2007 Male, age 72, unknown 72.3
1816 Male, age 51, unknown 71.9
1944 Female, age 72, unknown 56.2
1817 Female, age 42, unknown 55.6
2667 Female, age 75, unknown 53.8
2224 Female, age 72, unknown 50.7
1815 Male, age 53, unknown 49.7
2316 Male, age 76, right hemisphere 48.7
2825 Male, age 18, unknown 46.5
2273 Male, age 74, both hemispheres 38.3
2407 Male, age 75, both hemispheres 36.8
Red nucleus
nTPM: 51.8
2588 Male, age 74, left hemisphere 65.3
2503 Female, age 72, unknown 64.1
2725 Female, age 75, unknown 58.5
2785 Male, age 18, unknown 57.8
2769 Male, age 72, unknown 55.7
2227 Male, age 72, unknown 53.8
2584 Male, age 75, left hemisphere 51.4
1954 Female, age 42, unknown 46.5
1904 Male, age 53, unknown 46.1
1821 Female, age 72, unknown 43.1
1865 Male, age 51, unknown 39.5
2823 Male, age 76, right hemisphere 39.2
Substantia nigra
nTPM: 60.0
1916 Female, age 42, unknown 84.6
1941 Male, age 53, unknown 75.5
1851 Male, age 51, unknown 72.1
2665 Male, age 74, both hemispheres 66.3
2583 Male, age 75, right hemisphere 56.1
1889 Female, age 72, unknown 53.6
2241 Male, age 72, unknown 53.6
2699 Male, age 18, unknown 50.1
2409 Female, age 72, unknown 45.7
2590 Female, age 75, unknown 42.9
Superior colliculus
nTPM: 49.2
1796 Male, age 53, unknown 68.7
2261 Male, age 18, unknown 62.8
2087 Female, age 72, unknown 54.8
2664 Male, age 75, both hemispheres 49.6
1839 Male, age 51, unknown 48.5
2668 Female, age 75, unknown 47.0
1895 Male, age 76, right hemisphere 42.6
2587 Male, age 74, left hemisphere 42.1
1913 Female, age 42, unknown 39.7
1995 Male, age 72, unknown 36.3
Ventral tegmental area
nTPM: 57.0
1915 Female, age 42, unknown 68.2
2218 Male, age 76, both hemispheres 64.4
1942 Male, age 51, unknown 57.8
2410 Female, age 72, unknown 56.5
2223 Female, age 72, unknown 53.2
2021 Male, age 53, unknown 42.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 53.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.0
Samples: 183

Max nTPM: 219.3
Min nTPM: 5.5
Std nTPM: 32.2
Median nTPM: 45.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 219.3
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 183.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 130.1
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 128.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 125.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 123.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 120.9
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 117.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 112.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 112.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 109.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.2
FF:10158-103A5 76 years, female 27.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 45.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.0
Samples: 4

Max nTPM: 64.4
Min nTPM: 16.9
Sample A Female 64.4
Sample B Female 32.9
Sample C Male 16.9
Sample D Male 21.6
Midbrain
nTPM: 42.0
Samples: 4

Max nTPM: 59.1
Min nTPM: 30.1
Sample A Female 36.3
Sample B Female 30.1
Sample C Male 59.1
Sample D Male 42.6
Periaqueductal gray
nTPM: 28.6
Samples: 3

Max nTPM: 33.8
Min nTPM: 23.9
Sample B Female 33.8
Sample C Male 28.1
Sample D Male 23.9
Superior colliculi
nTPM: 45.3
Samples: 4

Max nTPM: 79.3
Min nTPM: 29.9
Sample A Female 79.3
Sample B Female 37.1
Sample C Male 35.0
Sample D Male 29.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.9
Samples: 4

Max nTPM: 11.2
Min nTPM: 4.1
Sample A Male 11.2
Sample B Male 9.2
Sample C Female 4.1
Sample D Female 7.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74635144 Antisense, RP_060215_03_D09, Mouse strain C57BL/6J (56 days, male) 0.0

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