MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.2 nTPM
HPA Brain:120.9 nTPM
GTEx:19.2 nTPM
FANTOM5:28.6 Scaled Tags Per Million
Pig:71.1 nTPM
Mouse:22.7 nTPM
Allen mouse:2.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 120.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.4
2666 Male, age 74, left hemisphere 175.2
2219 Male, age 76, both hemispheres 114.9
1827 Male, age 72, unknown 81.9
2586 Male, age 75, left hemisphere 71.9
2828 Female, age 72, unknown 67.7
2411 Female, age 72, unknown 67.0
2019 Male, age 18, unknown 66.1
1870 Female, age 42, unknown 61.1
1833 Male, age 53, unknown 49.4
1830 Male, age 51, unknown 48.6
Dorsal raphe nucleus
nTPM: 69.6
2298 Female, age 72, unknown 84.2
2750 Male, age 76, both hemispheres 78.6
2047 Male, age 72, unknown 74.8
1828 Male, age 53, unknown 72.9
2016 Female, age 72, unknown 37.4
Inferior colliculus
nTPM: 60.0
2097 Female, age 72, unknown 68.1
1848 Female, age 42, unknown 59.2
1890 Male, age 53, unknown 58.0
2849 Male, age 72, unknown 54.6
Median raphe nucleus
nTPM: 120.9
2220 Male, age 76, midline 120.9
Periaquaductal grey, anterior
nTPM: 79.5
1795 Male, age 51, unknown 87.6
2502 Female, age 75, unknown 76.5
1947 Male, age 18, unknown 74.4
Periaquaductal grey, dorsal
nTPM: 55.5
2464 Female, age 72, unknown 59.6
1831 Male, age 72, unknown 57.0
2850 Male, age 76, both hemispheres 54.3
1840 Male, age 53, unknown 51.0
Periaquaductal grey, lateral
nTPM: 40.9
2053 Male, age 18, unknown 46.5
2140 Male, age 76, both hemispheres 40.8
2272 Male, age 74, both hemispheres 35.4
Pretectal area
nTPM: 76.7
1816 Male, age 51, unknown 124.7
1944 Female, age 72, unknown 120.1
2007 Male, age 72, unknown 115.8
1817 Female, age 42, unknown 112.7
1815 Male, age 53, unknown 92.8
2224 Female, age 72, unknown 70.4
2825 Male, age 18, unknown 56.4
2667 Female, age 75, unknown 49.2
2407 Male, age 75, both hemispheres 39.9
2316 Male, age 76, right hemisphere 36.0
2273 Male, age 74, both hemispheres 25.9
Red nucleus
nTPM: 48.7
2785 Male, age 18, unknown 67.7
2584 Male, age 75, left hemisphere 63.3
1821 Female, age 72, unknown 54.8
2725 Female, age 75, unknown 53.7
2503 Female, age 72, unknown 52.9
1954 Female, age 42, unknown 47.3
2823 Male, age 76, right hemisphere 43.5
1865 Male, age 51, unknown 43.1
2769 Male, age 72, unknown 42.0
2227 Male, age 72, unknown 41.8
2588 Male, age 74, left hemisphere 38.2
1904 Male, age 53, unknown 36.3
Substantia nigra
nTPM: 81.3
1916 Female, age 42, unknown 135.5
1941 Male, age 53, unknown 124.9
1889 Female, age 72, unknown 102.7
1851 Male, age 51, unknown 89.8
2241 Male, age 72, unknown 81.3
2409 Female, age 72, unknown 75.3
2699 Male, age 18, unknown 62.1
2665 Male, age 74, both hemispheres 53.9
2590 Female, age 75, unknown 45.5
2583 Male, age 75, right hemisphere 41.8
Superior colliculus
nTPM: 68.5
2668 Female, age 75, unknown 135.5
2087 Female, age 72, unknown 92.6
1796 Male, age 53, unknown 70.1
2261 Male, age 18, unknown 70.0
1895 Male, age 76, right hemisphere 62.1
2587 Male, age 74, left hemisphere 59.7
1913 Female, age 42, unknown 53.5
1839 Male, age 51, unknown 53.2
2664 Male, age 75, both hemispheres 48.4
1995 Male, age 72, unknown 39.4
Ventral tegmental area
nTPM: 69.5
2218 Male, age 76, both hemispheres 89.5
1915 Female, age 42, unknown 83.3
2410 Female, age 72, unknown 74.5
1942 Male, age 51, unknown 58.0
2021 Male, age 53, unknown 56.4
2223 Female, age 72, unknown 55.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 19.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.2
Samples: 183

Max nTPM: 82.1
Min nTPM: 3.2
Std nTPM: 13.9
Median nTPM: 15.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 82.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 73.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 68.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 67.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 55.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 53.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 53.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 50.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 49.7
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 49.0
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 48.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 28.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.6
FF:10158-103A5 76 years, female 28.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 71.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.2
Samples: 4

Max nTPM: 59.4
Min nTPM: 14.6
Sample A Female 50.1
Sample B Female 44.8
Sample C Male 59.4
Sample D Male 14.6
Midbrain
nTPM: 71.1
Samples: 4

Max nTPM: 160.4
Min nTPM: 19.0
Sample A Female 19.0
Sample B Female 47.8
Sample C Male 160.4
Sample D Male 57.2
Periaqueductal gray
nTPM: 43.4
Samples: 3

Max nTPM: 53.7
Min nTPM: 30.6
Sample B Female 45.9
Sample C Male 53.7
Sample D Male 30.6
Superior colliculi
nTPM: 60.8
Samples: 4

Max nTPM: 79.1
Min nTPM: 44.3
Sample A Female 44.3
Sample B Female 57.2
Sample C Male 79.1
Sample D Male 62.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.8
Samples: 4

Max nTPM: 23.6
Min nTPM: 21.3
Sample A Male 21.3
Sample B Male 23.6
Sample C Female 23.4
Sample D Female 22.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
69526522 Antisense, RP_050421_01_A05, Mouse strain C57BL/6J (56 days, male) 2.8
72128778 Antisense, RP_051017_04_D06, Mouse strain C57BL/6J (56 days, male) 2.1

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