HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:26.8 nTPM
HPA Brain:81.6 nTPM
GTEx:26.8 nTPM
FANTOM5:42.2 Scaled Tags Per Million
Pig:32.8 nTPM
Mouse:74.7 nTPM
Allen mouse:14.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA013204
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 81.6
Sample id Sample description nTPM
Hippocampus
nTPM: 64.4
2148 Female, age 91, left hemisphere 76.5
2621 Female, age 67, right hemisphere 69.6
1911 Female, age 85, right hemisphere 67.8
1898 Male, age 80, left hemisphere 60.9
1855 Male, age 76, left hemisphere 56.0
2529 Female, age 94, left hemisphere 55.6
Dentate gyrus
nTPM: 73.8
2531 Female, age 67, both hemispheres 89.3
1927 Female, age 91, both hemispheres 87.5
2246 Female, age 85, both hemispheres 72.0
2528 Male, age 74, both hemispheres 70.3
2530 Female, age 94, left hemisphere 64.4
2010 Male, age 76, both hemispheres 59.0
Entorhinal gyrus
nTPM: 69.1
2613 Female, age 94, left hemisphere 89.3
2764 Male, age 80, right hemisphere 79.1
1787 Male, age 76, left hemisphere 66.2
2686 Male, age 75, right hemisphere 64.2
1938 Female, age 85, left hemisphere 59.1
2117 Female, age 91, right hemisphere 56.5
Hippocampus, CA1
nTPM: 75.0
2749 Male, age 80, left hemisphere 97.9
2082 Female, age 91, right hemisphere 71.2
1873 Female, age 85, both hemispheres 70.7
2527 Male, age 74, both hemispheres 68.7
2045 Male, age 76, both hemispheres 66.6
Hippocampus, CA2
nTPM: 68.1
2437 Female, age 94, left hemisphere 72.6
1963 Male, age 80, left hemisphere 71.1
1892 Male, age 76, both hemispheres 70.6
2249 Male, age 74, both hemispheres 66.2
2113 Female, age 91, right hemisphere 64.1
1940 Female, age 85, left hemisphere 63.7
Hippocampus, CA3
nTPM: 81.6
2436 Male, age 74, both hemispheres 110.4
2620 Female, age 94, left hemisphere 101.9
2861 Female, age 67, both hemispheres 76.0
2137 Male, age 80, left hemisphere 75.6
1867 Male, age 76, both hemispheres 66.6
1891 Female, age 85, both hemispheres 59.0
Parahippocampal cortex
nTPM: 66.6
2693 Female, age 94, both hemispheres 82.8
2245 Female, age 91, both hemispheres 73.6
1990 Female, age 91, right hemisphere 73.3
2622 Female, age 67, right hemisphere 71.1
2250 Female, age 67, right hemisphere 65.4
2532 Female, age 72, left hemisphere 65.0
1850 Male, age 80, both hemispheres 64.7
1933 Female, age 85, both hemispheres 63.5
2692 Male, age 74, both hemispheres 54.5
2018 Male, age 76, both hemispheres 52.4
Perirhinal gyrus
nTPM: 70.6
2521 Female, age 94, right hemisphere 79.3
1847 Female, age 91, left hemisphere 79.1
1794 Male, age 80, right hemisphere 70.0
1841 Female, age 85, right hemisphere 62.6
2848 Male, age 76, right hemisphere 61.8
Subiculum
nTPM: 62.4
2729 Female, age 91, right hemisphere 74.2
1977 Female, age 85, both hemispheres 67.6
1901 Male, age 80, both hemispheres 62.1
2438 Female, age 94, left hemisphere 61.3
2619 Male, age 74, both hemispheres 58.3
2042 Male, age 76, both hemispheres 51.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 26.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.8
Samples: 255

Max nTPM: 59.7
Min nTPM: 11.9
Std nTPM: 8.4
Median nTPM: 25.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 59.7
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 49.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 48.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 46.7
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 45.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 45.3
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 44.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 43.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 42.5
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 41.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 41.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 42.2
FF:10169-103B7 60 years, female 46.7
FF:10153-102I9 76 years, female 37.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 32.8
Pig sample Sample description nTPM
Subiculum
nTPM: 27.1
Samples: 4

Max nTPM: 32.3
Min nTPM: 22.7
Sample A Female 32.3
Sample B Female 25.6
Sample C Male 27.9
Sample D Male 22.7
Dorsal hippocampus
nTPM: 32.8
Samples: 4

Max nTPM: 40.4
Min nTPM: 27.3
Sample A Female 40.4
Sample B Female 34.1
Sample C Male 27.3
Sample D Male 29.2
Entorhinal cortex
nTPM: 31.2
Samples: 4

Max nTPM: 32.3
Min nTPM: 29.9
Sample A Female 32.3
Sample B Female 31.8
Sample C Male 29.9
Sample D Male 30.7
Ventral hippocampus
nTPM: 32.2
Samples: 4

Max nTPM: 36.0
Min nTPM: 24.4
Sample A Female 32.9
Sample B Female 24.4
Sample C Male 36.0
Sample D Male 35.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 74.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 69.4
Samples: 4

Max nTPM: 73.9
Min nTPM: 63.2
Sample A Male 73.2
Sample B Male 73.9
Sample C Female 67.4
Sample D Female 63.2
Hippocampal formation
nTPM: 74.7
Samples: 4

Max nTPM: 77.8
Min nTPM: 71.3
Sample A Male 71.3
Sample B Male 74.3
Sample C Female 75.5
Sample D Female 77.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 14.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.4
513022 Antisense, RP_040810_01_B02, Mouse strain C57BL/6J (56 days, male) 17.3
75145998 Antisense, RP_060220_02_B04, Mouse strain C57BL/6J (56 days, male) 11.4

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