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  • CAP1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:81.4 nTPM
HPA Brain:86.1 nTPM
GTEx:81.4 nTPM
FANTOM5:116.3 Scaled Tags Per Million
Pig:87.9 nTPM
Mouse:187.6 nTPM
Allen mouse:22.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.1
Sample id Sample description nTPM
Amygdala
nTPM: 86.1
2514 Male, age 75, right hemisphere 91.9
2695 Female, age 67, right hemisphere 91.1
1987 Female, age 91, left hemisphere 87.8
2814 Male, age 76, right hemisphere 83.9
2517 Female, age 94, left hemisphere 75.7
Basal amygdala
nTPM: 78.4
2110 Male, age 80, left hemisphere 87.7
2609 Male, age 75, right hemisphere 85.7
2243 Female, age 91, right hemisphere 84.7
1955 Male, age 76, both hemispheres 83.8
2685 Female, age 94, left hemisphere 71.2
2827 Female, age 67, right hemisphere 57.5
Central amygdala
nTPM: 73.2
1905 Male, age 76, both hemispheres 79.8
2239 Male, age 80, left hemisphere 78.1
2515 Male, age 75, right hemisphere 77.3
2826 Female, age 94, left hemisphere 69.3
2701 Female, age 91, right hemisphere 61.7
Corticomedial amygdala
nTPM: 77.7
2428 Male, age 75, right hemisphere 86.4
2240 Male, age 76, both hemispheres 85.2
2829 Male, age 80, left hemisphere 82.3
2429 Female, age 94, left hemisphere 81.9
2242 Female, age 91, right hemisphere 69.7
2535 Female, age 67, right hemisphere 61.0
Lateral amygdala
nTPM: 75.9
1883 Male, age 76, both hemispheres 87.7
2516 Male, age 75, right hemisphere 86.7
2534 Female, age 94, left hemisphere 73.8
2256 Male, age 80, left hemisphere 73.4
2830 Female, age 67, right hemisphere 73.3
2255 Female, age 91, right hemisphere 60.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 81.4
Samples: 181

Max nTPM: 160.3
Min nTPM: 53.3
Std nTPM: 14.7
Median nTPM: 78.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 160.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 121.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 120.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 118.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 115.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 109.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 108.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 107.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 106.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 106.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 104.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 104.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 104.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 103.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 102.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 102.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 102.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 100.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 99.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 98.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 98.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 98.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 98.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 96.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 95.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 95.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 95.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 95.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 95.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 94.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 94.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 93.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 93.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 93.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 93.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 93.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 93.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 93.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 93.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 92.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 91.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 91.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 90.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 90.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 89.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 89.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 89.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 89.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 88.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 88.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 88.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 88.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 88.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 88.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 88.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 87.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 87.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 86.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 86.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 86.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 86.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 86.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 86.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 85.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 85.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 85.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 85.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 84.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 84.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 84.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 83.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 83.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 83.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 82.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 82.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 82.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 82.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 82.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 80.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 80.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 80.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 79.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 79.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 79.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 79.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 79.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 78.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 78.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 78.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 78.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 78.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 78.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 77.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 77.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 77.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 77.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 77.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 77.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 77.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 76.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 76.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 76.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 76.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 76.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 76.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 76.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 76.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 76.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 76.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 76.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 75.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 75.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 75.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 75.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 75.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 75.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 75.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 74.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 74.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 74.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 74.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 74.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 74.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 73.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 73.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 73.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 72.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 72.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 72.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 72.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 72.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 71.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 71.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 71.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 71.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 71.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 71.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 71.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 70.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 70.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 70.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 70.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 70.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 70.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 70.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 69.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 69.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 69.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 69.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 68.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 68.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 68.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 67.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 67.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 66.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 66.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 66.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 66.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 66.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 66.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 65.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 65.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 64.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 64.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 64.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 64.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 63.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 62.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 62.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 62.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 62.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 61.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 61.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 60.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 60.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 59.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 58.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 58.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 57.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 56.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 53.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

116.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 116.3
FF:10151-102I7 76 years, female 116.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.9
Pig sample Sample description nTPM
Amygdala
nTPM: 87.9
Samples: 4

Max nTPM: 113.3
Min nTPM: 77.0
Sample A Female 113.3
Sample B Female 83.0
Sample C Male 77.0
Sample D Male 78.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

187.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 187.6
Samples: 4

Max nTPM: 193.5
Min nTPM: 183.1
Sample A Male 188.9
Sample B Male 193.5
Sample C Female 183.1
Sample D Female 184.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.1
323396 Antisense, RP_040617_01_A03, Mouse strain C57BL/6J (56 days, male) 22.4
76081921 Antisense, RP_060626_01_A01, Mouse strain C57BL/6J (56 days, male) 21.9

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