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DNAJB1
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  • SUMMARY

  • TISSUE

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  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • DNAJB1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:171.1 nTPM
FANTOM5:136.2 Scaled Tags Per Million
Pig:65.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA063247Antibody CAB017450
Glial cells Not detectedMedium
Neuronal cells Not detectedLow





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

171.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 171.1
Samples: 300

Max nTPM: 3968.3
Min nTPM: 31.1
Std nTPM: 316.5
Median nTPM: 71.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 3968.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1977.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 1249.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1193.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1062.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 1016.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1010.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 929.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 893.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 840.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 774.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 753.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 717.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 706.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 664.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 629.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 618.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 588.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 584.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 576.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 541.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 533.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 530.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 528.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 509.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 474.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 467.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 421.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 403.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 384.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 378.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 376.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 361.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 358.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 351.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 348.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 347.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 315.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 310.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 304.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 279.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 279.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 270.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 268.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 268.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 253.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 252.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 251.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 241.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 240.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 223.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 217.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 212.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 210.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 205.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 197.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 192.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 191.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 187.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 185.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 177.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 176.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 175.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 172.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 168.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 167.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 166.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 166.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 165.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 163.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 161.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 160.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 156.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 154.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 153.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 149.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 148.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 144.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 142.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 138.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 136.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 133.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 133.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 129.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 129.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 127.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 126.9
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 126.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 126.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 125.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 125.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 124.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 123.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 121.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 116.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 114.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 112.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 111.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 109.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 108.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 108.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 107.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 105.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 105.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 103.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 102.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 101.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 101.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 97.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 96.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 96.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 95.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 95.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 94.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 93.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 91.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 90.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 88.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 88.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 87.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 87.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 87.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 86.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 85.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 85.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 85.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 84.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 83.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 83.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 82.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 82.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 82.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 81.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 81.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 80.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 80.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 79.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 79.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 78.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 77.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 77.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 77.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 76.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 76.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 75.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 75.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 75.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 74.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 72.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 71.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 71.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 71.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 71.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 70.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 70.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 70.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 70.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 70.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 68.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 68.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 67.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 66.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 65.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 65.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 65.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 64.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 63.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 63.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 63.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 62.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 62.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 62.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 62.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 62.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 61.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 61.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 61.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 61.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 61.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 60.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 60.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 59.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 59.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 59.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 59.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 59.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 58.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 58.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 58.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 58.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 58.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 58.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 57.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 56.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 55.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 55.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 54.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 54.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 54.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 54.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 54.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 54.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 53.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 53.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 53.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 53.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 53.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 53.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 53.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 52.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 52.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 52.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 52.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 52.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 51.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 51.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 51.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 51.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 51.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 51.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 51.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 51.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 50.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 50.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 50.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 50.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 50.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 49.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 49.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 49.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 49.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 49.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 49.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 49.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 49.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 49.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 49.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 48.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 48.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 48.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 48.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 47.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 47.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 47.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 47.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 47.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 47.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 46.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 46.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 46.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 46.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 45.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 45.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 45.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 45.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 44.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 44.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 44.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 44.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 44.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 44.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 44.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 44.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 44.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 43.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 43.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 43.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 43.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 42.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 41.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 41.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 41.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 41.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 41.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 41.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 41.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 41.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 40.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 40.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 40.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 40.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 40.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 39.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 39.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 38.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 38.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 38.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 37.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 36.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 36.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 36.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 35.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 35.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 35.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 35.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 35.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 33.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 33.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 32.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 31.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

136.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 136.2
FF:10164-103B2 76 years, female 136.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.5
Pig sample Sample description nTPM
Caudate
nTPM: 65.5
Samples: 4

Max nTPM: 79.6
Min nTPM: 57.7
Sample A Female 57.7
Sample B Female 62.8
Sample C Male 79.6
Sample D Male 61.7

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