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  • H3-3B
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:308.5 nTPM
HPA Brain:311.2 nTPM
GTEx:308.5 nTPM
FANTOM5:193.8 Scaled Tags Per Million
Pig:15.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

311.2
Sample id Sample description nTPM
Amygdala
nTPM: 311.2
2814 Male, age 76, right hemisphere 367.1
2695 Female, age 67, right hemisphere 328.0
1987 Female, age 91, left hemisphere 318.5
2517 Female, age 94, left hemisphere 285.3
2514 Male, age 75, right hemisphere 257.0
Basal amygdala
nTPM: 250.3
1955 Male, age 76, both hemispheres 305.0
2110 Male, age 80, left hemisphere 286.5
2609 Male, age 75, right hemisphere 264.0
2827 Female, age 67, right hemisphere 230.8
2243 Female, age 91, right hemisphere 213.3
2685 Female, age 94, left hemisphere 202.6
Central amygdala
nTPM: 289.0
1905 Male, age 76, both hemispheres 337.0
2515 Male, age 75, right hemisphere 305.9
2826 Female, age 94, left hemisphere 293.7
2239 Male, age 80, left hemisphere 257.6
2701 Female, age 91, right hemisphere 250.9
Corticomedial amygdala
nTPM: 215.9
2428 Male, age 75, right hemisphere 248.5
2829 Male, age 80, left hemisphere 234.0
2240 Male, age 76, both hemispheres 218.7
2535 Female, age 67, right hemisphere 209.0
2429 Female, age 94, left hemisphere 202.6
2242 Female, age 91, right hemisphere 183.0
Lateral amygdala
nTPM: 280.9
1883 Male, age 76, both hemispheres 309.0
2830 Female, age 67, right hemisphere 309.0
2516 Male, age 75, right hemisphere 276.0
2534 Female, age 94, left hemisphere 270.2
2255 Female, age 91, right hemisphere 264.2
2256 Male, age 80, left hemisphere 257.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

308.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 308.5
Samples: 181

Max nTPM: 697.8
Min nTPM: 178.6
Std nTPM: 98.0
Median nTPM: 281.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 697.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 657.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 653.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 640.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 634.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 581.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 580.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 537.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 527.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 496.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 491.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 490.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 489.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 475.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 472.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 443.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 439.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 432.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 432.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 420.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 416.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 415.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 414.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 412.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 409.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 401.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 394.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 394.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 391.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 388.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 381.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 381.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 380.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 379.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 370.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 365.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 358.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 356.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 351.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 349.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 347.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 346.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 343.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 343.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 334.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 332.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 332.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 330.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 328.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 328.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 327.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 324.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 324.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 323.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 323.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 323.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 323.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 321.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 320.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 320.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 317.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 317.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 314.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 312.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 310.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 309.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 308.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 307.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 306.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 306.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 305.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 305.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 304.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 304.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 304.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 304.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 303.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 300.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 300.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 294.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 294.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 291.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 290.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 288.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 288.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 288.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 284.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 284.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 284.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 283.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 281.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 280.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 277.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 277.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 277.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 276.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 275.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 273.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 272.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 271.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 271.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 271.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 269.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 268.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 268.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 268.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 266.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 265.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 265.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 265.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 265.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 264.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 262.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 262.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 261.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 260.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 260.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 259.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 257.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 256.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 256.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 254.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 253.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 252.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 250.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 249.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 249.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 247.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 247.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 246.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 244.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 244.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 244.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 243.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 243.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 243.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 242.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 241.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 240.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 240.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 240.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 238.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 237.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 233.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 232.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 231.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 230.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 230.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 230.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 228.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 228.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 226.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 225.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 225.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 223.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 220.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 220.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 219.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 219.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 218.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 216.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 216.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 216.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 215.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 213.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 212.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 211.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 211.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 210.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 209.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 208.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 208.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 207.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 206.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 206.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 205.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 204.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 204.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 197.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 192.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 178.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

193.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 193.8
FF:10151-102I7 76 years, female 193.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.5
Pig sample Sample description nTPM
Amygdala
nTPM: 15.6
Samples: 4

Max nTPM: 20.4
Min nTPM: 10.9
Sample A Female 10.9
Sample B Female 12.1
Sample C Male 20.4
Sample D Male 18.9

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