MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:130.5 nTPM
HPA Brain:44.4 nTPM
GTEx:130.5 nTPM
FANTOM5:63.6 Scaled Tags Per Million
Pig:16.1 nTPM
Mouse:118.8 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 44.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.2
2586 Male, age 75, left hemisphere 43.9
2828 Female, age 72, unknown 38.8
1870 Female, age 42, unknown 38.7
1833 Male, age 53, unknown 34.9
1827 Male, age 72, unknown 32.3
1830 Male, age 51, unknown 30.8
2411 Female, age 72, unknown 30.1
2019 Male, age 18, unknown 29.4
2219 Male, age 76, both hemispheres 29.3
2666 Male, age 74, left hemisphere 23.7
Dorsal raphe nucleus
nTPM: 41.6
2016 Female, age 72, unknown 49.8
2298 Female, age 72, unknown 43.0
1828 Male, age 53, unknown 40.4
2047 Male, age 72, unknown 38.2
2750 Male, age 76, both hemispheres 36.7
Inferior colliculus
nTPM: 44.4
1848 Female, age 42, unknown 49.4
2097 Female, age 72, unknown 45.0
1890 Male, age 53, unknown 43.5
2849 Male, age 72, unknown 39.7
Median raphe nucleus
nTPM: 40.8
2220 Male, age 76, midline 40.8
Periaquaductal grey, anterior
nTPM: 38.0
2502 Female, age 75, unknown 43.3
1947 Male, age 18, unknown 40.4
1795 Male, age 51, unknown 30.2
Periaquaductal grey, dorsal
nTPM: 41.6
2850 Male, age 76, both hemispheres 49.8
1840 Male, age 53, unknown 48.8
2464 Female, age 72, unknown 40.7
1831 Male, age 72, unknown 27.1
Periaquaductal grey, lateral
nTPM: 37.5
2140 Male, age 76, both hemispheres 48.8
2053 Male, age 18, unknown 36.2
2272 Male, age 74, both hemispheres 27.6
Pretectal area
nTPM: 38.1
2667 Female, age 75, unknown 45.2
1817 Female, age 42, unknown 44.1
1944 Female, age 72, unknown 42.7
2224 Female, age 72, unknown 42.6
2316 Male, age 76, right hemisphere 40.7
1816 Male, age 51, unknown 36.0
1815 Male, age 53, unknown 35.8
2825 Male, age 18, unknown 35.2
2273 Male, age 74, both hemispheres 33.6
2007 Male, age 72, unknown 32.9
2407 Male, age 75, both hemispheres 30.6
Red nucleus
nTPM: 37.8
1821 Female, age 72, unknown 52.8
1954 Female, age 42, unknown 48.1
2227 Male, age 72, unknown 45.6
1904 Male, age 53, unknown 43.1
2769 Male, age 72, unknown 42.3
2503 Female, age 72, unknown 41.0
2823 Male, age 76, right hemisphere 40.8
1865 Male, age 51, unknown 38.2
2785 Male, age 18, unknown 30.3
2725 Female, age 75, unknown 25.9
2588 Male, age 74, left hemisphere 24.3
2584 Male, age 75, left hemisphere 21.2
Substantia nigra
nTPM: 43.9
2241 Male, age 72, unknown 66.5
2699 Male, age 18, unknown 58.6
1916 Female, age 42, unknown 50.7
1851 Male, age 51, unknown 48.4
1889 Female, age 72, unknown 44.7
2409 Female, age 72, unknown 38.8
2665 Male, age 74, both hemispheres 35.4
2590 Female, age 75, unknown 34.4
1941 Male, age 53, unknown 32.4
2583 Male, age 75, right hemisphere 28.8
Superior colliculus
nTPM: 34.6
2668 Female, age 75, unknown 43.1
1895 Male, age 76, right hemisphere 38.9
2087 Female, age 72, unknown 38.5
1839 Male, age 51, unknown 35.9
2664 Male, age 75, both hemispheres 34.5
2261 Male, age 18, unknown 33.4
1995 Male, age 72, unknown 31.7
1796 Male, age 53, unknown 31.5
2587 Male, age 74, left hemisphere 29.7
1913 Female, age 42, unknown 28.7
Ventral tegmental area
nTPM: 34.8
1942 Male, age 51, unknown 38.4
1915 Female, age 42, unknown 37.1
2218 Male, age 76, both hemispheres 36.4
2021 Male, age 53, unknown 35.8
2410 Female, age 72, unknown 32.0
2223 Female, age 72, unknown 29.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 130.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 130.5
Samples: 183

Max nTPM: 537.7
Min nTPM: 25.9
Std nTPM: 89.7
Median nTPM: 111.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 537.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 536.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 535.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 500.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 424.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 371.2
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 313.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 310.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 302.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 293.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 282.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 63.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.6
FF:10158-103A5 76 years, female 63.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.3
Samples: 4

Max nTPM: 15.7
Min nTPM: 12.5
Sample A Female 15.7
Sample B Female 12.5
Sample C Male 13.9
Sample D Male 15.0
Midbrain
nTPM: 16.1
Samples: 4

Max nTPM: 19.2
Min nTPM: 13.9
Sample A Female 19.2
Sample B Female 16.8
Sample C Male 13.9
Sample D Male 14.3
Periaqueductal gray
nTPM: 14.1
Samples: 3

Max nTPM: 14.6
Min nTPM: 13.3
Sample B Female 14.4
Sample C Male 13.3
Sample D Male 14.6
Superior colliculi
nTPM: 15.1
Samples: 4

Max nTPM: 15.9
Min nTPM: 12.8
Sample A Female 15.9
Sample B Female 12.8
Sample C Male 15.6
Sample D Male 15.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 118.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 118.8
Samples: 4

Max nTPM: 125.9
Min nTPM: 113.9
Sample A Male 125.9
Sample B Male 113.9
Sample C Female 116.7
Sample D Female 118.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
76003665 Antisense, RP_060608_03_A06, Mouse strain C57BL/6J (56 days, male) 0.5

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