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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • SNAP25
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:513.0 nTPM
FANTOM5:897.3 Scaled Tags Per Million
Pig:784.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA001830Antibody HPA071013Antibody CAB000360
Glial cells MediumNot detectedNot detected
Neuronal cells MediumNot detectedNot detected






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

513.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 513.0
Samples: 300

Max nTPM: 1892.6
Min nTPM: 11.5
Std nTPM: 365.3
Median nTPM: 466.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 1892.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 1786.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1697.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1467.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1390.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1381.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1337.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1196.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1188.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1186.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1183.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 1178.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1161.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1143.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1140.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1140.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1117.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1115.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1115.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1091.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1077.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1072.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1051.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1024.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1022.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1015.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1008.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 998.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 989.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 989.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 988.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 988.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 984.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 968.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 961.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 955.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 952.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 942.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 934.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 928.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 923.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 917.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 911.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 902.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 898.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 895.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 887.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 883.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 880.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 877.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 877.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 866.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 861.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 858.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 854.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 850.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 842.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 839.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 825.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 823.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 820.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 818.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 818.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 817.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 815.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 809.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 804.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 793.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 789.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 787.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 781.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 779.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 769.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 767.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 767.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 755.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 754.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 754.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 751.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 750.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 748.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 747.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 746.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 738.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 738.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 735.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 734.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 721.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 718.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 716.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 714.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 714.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 711.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 710.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 701.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 698.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 693.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 688.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 671.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 669.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 668.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 667.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 666.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 666.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 664.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 659.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 658.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 656.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 653.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 652.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 649.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 645.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 627.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 622.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 615.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 615.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 614.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 613.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 609.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 605.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 599.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 597.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 594.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 582.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 582.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 581.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 580.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 574.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 564.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 562.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 558.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 555.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 545.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 542.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 535.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 534.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 532.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 532.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 522.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 522.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 521.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 519.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 509.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 507.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 506.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 500.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 500.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 493.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 483.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 468.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 465.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 463.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 460.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 457.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 457.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 455.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 451.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 451.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 447.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 443.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 439.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 436.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 430.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 430.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 426.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 425.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 423.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 418.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 416.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 415.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 413.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 410.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 406.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 404.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 396.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 395.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 390.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 388.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 374.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 374.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 372.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 369.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 366.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 363.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 351.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 347.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 344.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 341.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 340.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 321.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 321.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 321.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 317.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 306.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 295.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 290.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 290.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 278.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 269.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 269.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 268.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 265.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 258.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 257.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 247.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 246.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 243.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 240.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 238.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 226.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 226.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 225.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 222.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 221.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 221.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 220.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 212.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 209.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 208.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 207.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 201.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 195.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 189.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 186.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 186.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 185.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 185.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 185.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 184.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 183.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 183.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 176.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 165.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 158.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 146.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 146.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 145.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 144.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 143.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 141.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 140.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 140.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 140.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 135.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 134.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 132.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 130.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 120.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 118.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 118.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 118.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 114.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 113.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 113.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 110.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 96.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 96.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 95.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 91.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 90.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 89.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 86.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 84.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 78.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 76.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 68.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 68.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 68.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 67.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 66.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 64.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 62.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 57.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 55.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 54.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 52.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 51.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 51.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 48.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 47.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 44.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 44.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 42.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 42.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 38.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 38.0
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 33.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 31.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 30.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 28.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 27.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 27.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 24.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 24.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 23.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 22.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 22.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 17.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 17.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 11.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

897.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 897.3
FF:10164-103B2 76 years, female 897.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

784.1
Pig sample Sample description nTPM
Caudate
nTPM: 784.1
Samples: 4

Max nTPM: 949.5
Min nTPM: 719.6
Sample A Female 733.9
Sample B Female 719.6
Sample C Male 949.5
Sample D Male 733.5

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