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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:443.0 nTPM
GTEx:443.0 nTPM
FANTOM5:183.0 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

443.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 443.0
Samples: 105

Max nTPM: 1027.0
Min nTPM: 270.3
Std nTPM: 104.3
Median nTPM:
2_1 77 years, female 1027.0
307_1 66 years, female 839.1
495_1 57 years, female 754.7
139_1 64 years, female 621.5
322_1 76 years, male 575.8
145_1 84 years, male 570.7
89_1 63 years, male 566.1
501_1 88 years, male 560.1
348_1 84 years, male 556.4
6_1 73 years, female 555.4
311_1 78 years, male 552.0
119_1 70 years, female 549.8
447_1 81 years, male 547.5
413_1 59 years, female 541.5
293_1 68 years, female 538.9
491_1 89 years, female 536.6
117_1 61 years, male 535.9
17_1 71 years, male 523.5
81_1 67 years, male 523.5
321_1 62 years, female 507.6
120_1 70 years, female 506.6
324_1 76 years, male 502.8
126_1 63 years, male 500.2
43_1 64 years, female 500.1
308_1 70 years, female 498.5
490_1 67 years, female 492.3
149_1 88 years, male 484.1
316_1 62 years, male 482.1
4_1 88 years, female 479.2
350_1 84 years, female 475.0
162_1 79 years, female 468.8
415_1 77 years, female 465.9
518_1 75 years, female 461.3
35_1 74 years, female 460.1
313_1 79 years, female 460.0
18_1 88 years, male 459.6
526_1 61 years, male 457.4
466_1 57 years, female 455.4
41_1 94 years, female 455.2
142_1 61 years, female 453.2
115_1 83 years, male 452.9
377_1 82 years, female 450.6
153_1 70 years, female 441.0
386_1 76 years, male 432.5
317_1 60 years, male 431.0
414_1 84 years, female 430.7
109_1 81 years, female 430.6
396_1 62 years, male 427.9
353_1 82 years, female 427.7
506_1 65 years, male 424.0
292_1 71 years, male 423.5
319_1 81 years, male 419.6
315_1 62 years, female 417.3
384_1 83 years, male 417.1
173_1 67 years, male 416.4
468_1 89 years, male 410.2
499_1 55 years, female 409.2
9_1 66 years, female 409.1
335_1 73 years, female 407.8
405_1 91 years, male 406.5
291_1 76 years, male 405.5
254_1 77 years, female 403.2
172_1 72 years, female 402.6
404_1 82 years, female 402.5
320_1 89 years, female 401.9
352_1 62 years, male 399.6
32_1 67 years, male 399.1
243_1 75 years, male 398.0
266_1 85 years, male 397.9
314_1 67 years, male 397.6
288_1 66 years, female 396.2
406_1 79 years, male 395.9
376_1 75 years, female 395.4
425_1 59 years, female 393.8
375_1 74 years, female 392.7
286_1 68 years, female 387.9
480_1 63 years, male 386.5
318_1 68 years, male 379.9
217_1 76 years, male 379.5
452_1 88 years, female 378.7
229_1 69 years, female 375.7
237_1 82 years, male 375.1
503_1 68 years, male 372.3
177_1 74 years, male 371.6
251_1 78 years, male 370.9
295_1 61 years, female 367.8
265_1 87 years, male 364.4
517_1 88 years, male 363.9
42_1 85 years, male 362.4
351_1 91 years, male 360.6
189_1 76 years, male 359.9
218_1 71 years, female 355.9
347_1 72 years, male 355.0
137_1 83 years, male 351.3
264_1 73 years, female 349.7
354_1 81 years, female 337.9
163_1 78 years, male 335.0
356_1 87 years, female 335.0
379_1 60 years, male 329.3
99_1 64 years, male 325.0
246_1 77 years, male 316.9
349_1 83 years, male 316.0
389_1 86 years, female 314.5
355_1 70 years, female 300.7
394_1 75 years, female 270.3
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RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

183.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 183.0
FF:10030-101E3 24-65 years, mixed 183.0

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