MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.6 nTPM
HPA Brain:24.3 nTPM
GTEx:21.6 nTPM
FANTOM5:36.7 Scaled Tags Per Million
Pig:27.7 nTPM
Mouse:32.0 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 24.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.9
2411 Female, age 72, unknown 21.9
1870 Female, age 42, unknown 21.4
1827 Male, age 72, unknown 20.7
1830 Male, age 51, unknown 20.5
2019 Male, age 18, unknown 20.3
1833 Male, age 53, unknown 20.2
2828 Female, age 72, unknown 20.2
2666 Male, age 74, left hemisphere 19.1
2586 Male, age 75, left hemisphere 18.9
2219 Male, age 76, both hemispheres 15.3
Dorsal raphe nucleus
nTPM: 22.7
2298 Female, age 72, unknown 24.3
2047 Male, age 72, unknown 23.5
1828 Male, age 53, unknown 23.3
2016 Female, age 72, unknown 21.5
2750 Male, age 76, both hemispheres 20.7
Inferior colliculus
nTPM: 20.6
2097 Female, age 72, unknown 22.7
1848 Female, age 42, unknown 21.0
1890 Male, age 53, unknown 19.4
2849 Male, age 72, unknown 19.3
Median raphe nucleus
nTPM: 21.2
2220 Male, age 76, midline 21.2
Periaquaductal grey, anterior
nTPM: 22.8
1947 Male, age 18, unknown 24.7
2502 Female, age 75, unknown 23.4
1795 Male, age 51, unknown 20.3
Periaquaductal grey, dorsal
nTPM: 20.5
2850 Male, age 76, both hemispheres 22.7
1840 Male, age 53, unknown 21.1
1831 Male, age 72, unknown 19.7
2464 Female, age 72, unknown 18.6
Periaquaductal grey, lateral
nTPM: 21.8
2140 Male, age 76, both hemispheres 25.1
2053 Male, age 18, unknown 21.1
2272 Male, age 74, both hemispheres 19.3
Pretectal area
nTPM: 20.9
2667 Female, age 75, unknown 24.1
2316 Male, age 76, right hemisphere 23.3
2273 Male, age 74, both hemispheres 22.6
2825 Male, age 18, unknown 21.0
2224 Female, age 72, unknown 20.8
1817 Female, age 42, unknown 20.6
1815 Male, age 53, unknown 20.3
2407 Male, age 75, both hemispheres 20.1
1816 Male, age 51, unknown 19.8
2007 Male, age 72, unknown 19.1
1944 Female, age 72, unknown 18.9
Red nucleus
nTPM: 21.2
1821 Female, age 72, unknown 25.4
1865 Male, age 51, unknown 23.5
1954 Female, age 42, unknown 22.9
1904 Male, age 53, unknown 21.8
2227 Male, age 72, unknown 21.8
2769 Male, age 72, unknown 21.5
2503 Female, age 72, unknown 21.2
2823 Male, age 76, right hemisphere 20.7
2584 Male, age 75, left hemisphere 19.5
2588 Male, age 74, left hemisphere 19.1
2785 Male, age 18, unknown 19.0
2725 Female, age 75, unknown 18.4
Substantia nigra
nTPM: 24.3
1916 Female, age 42, unknown 28.5
2409 Female, age 72, unknown 28.3
2241 Male, age 72, unknown 26.3
1851 Male, age 51, unknown 26.0
2590 Female, age 75, unknown 23.7
2699 Male, age 18, unknown 23.2
1889 Female, age 72, unknown 23.1
1941 Male, age 53, unknown 23.1
2583 Male, age 75, right hemisphere 21.2
2665 Male, age 74, both hemispheres 19.3
Superior colliculus
nTPM: 19.7
1796 Male, age 53, unknown 21.5
2587 Male, age 74, left hemisphere 21.0
2261 Male, age 18, unknown 20.8
1839 Male, age 51, unknown 20.2
1913 Female, age 42, unknown 19.4
2668 Female, age 75, unknown 19.4
1995 Male, age 72, unknown 19.2
2087 Female, age 72, unknown 19.0
2664 Male, age 75, both hemispheres 18.6
1895 Male, age 76, right hemisphere 18.1
Ventral tegmental area
nTPM: 22.2
1915 Female, age 42, unknown 25.4
2410 Female, age 72, unknown 24.4
2223 Female, age 72, unknown 22.2
2021 Male, age 53, unknown 20.6
1942 Male, age 51, unknown 20.5
2218 Male, age 76, both hemispheres 20.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.6
Samples: 183

Max nTPM: 50.9
Min nTPM: 13.6
Std nTPM: 5.3
Median nTPM: 20.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 50.9
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 45.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 40.8
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 38.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 37.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 37.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 35.3
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 34.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 32.8
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 31.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 31.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 36.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.7
FF:10158-103A5 76 years, female 36.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 27.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.8
Samples: 4

Max nTPM: 31.3
Min nTPM: 24.8
Sample A Female 31.3
Sample B Female 25.3
Sample C Male 24.8
Sample D Male 25.9
Midbrain
nTPM: 27.6
Samples: 4

Max nTPM: 31.0
Min nTPM: 23.8
Sample A Female 28.8
Sample B Female 31.0
Sample C Male 23.8
Sample D Male 26.8
Periaqueductal gray
nTPM: 26.6
Samples: 3

Max nTPM: 27.9
Min nTPM: 25.3
Sample B Female 27.9
Sample C Male 25.3
Sample D Male 26.5
Superior colliculi
nTPM: 27.7
Samples: 4

Max nTPM: 32.4
Min nTPM: 25.1
Sample A Female 32.4
Sample B Female 25.1
Sample C Male 26.0
Sample D Male 27.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 32.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.0
Samples: 4

Max nTPM: 33.7
Min nTPM: 30.4
Sample A Male 31.3
Sample B Male 32.4
Sample C Female 30.4
Sample D Female 33.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
76097705 Antisense, RP_060626_01_C01, Mouse strain C57BL/6J (56 days, male) 0.9

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo