HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:145.6 nTPM
HPA Brain:338.5 nTPM
GTEx:145.6 nTPM
FANTOM5:100.7 Scaled Tags Per Million
Pig:102.3 nTPM
Mouse:89.5 nTPM
Allen mouse:17.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA022034Antibody HPA022901
Glial cells Not detectedLow
Neuronal cells Not detectedLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 338.5
Sample id Sample description nTPM
Hippocampus
nTPM: 313.1
2148 Female, age 91, left hemisphere 372.3
1855 Male, age 76, left hemisphere 344.2
2529 Female, age 94, left hemisphere 294.9
2621 Female, age 67, right hemisphere 293.7
1911 Female, age 85, right hemisphere 289.6
1898 Male, age 80, left hemisphere 283.9
Dentate gyrus
nTPM: 302.0
2531 Female, age 67, both hemispheres 346.3
1927 Female, age 91, both hemispheres 334.5
2528 Male, age 74, both hemispheres 300.4
2246 Female, age 85, both hemispheres 291.8
2010 Male, age 76, both hemispheres 277.7
2530 Female, age 94, left hemisphere 261.5
Entorhinal gyrus
nTPM: 279.6
2686 Male, age 75, right hemisphere 311.1
1938 Female, age 85, left hemisphere 286.9
2613 Female, age 94, left hemisphere 281.4
2764 Male, age 80, right hemisphere 277.0
1787 Male, age 76, left hemisphere 273.6
2117 Female, age 91, right hemisphere 247.5
Hippocampus, CA1
nTPM: 338.5
2045 Male, age 76, both hemispheres 399.4
2749 Male, age 80, left hemisphere 395.8
1873 Female, age 85, both hemispheres 319.8
2082 Female, age 91, right hemisphere 307.7
2527 Male, age 74, both hemispheres 269.8
Hippocampus, CA2
nTPM: 279.9
1963 Male, age 80, left hemisphere 338.8
2113 Female, age 91, right hemisphere 288.9
1940 Female, age 85, left hemisphere 278.3
2437 Female, age 94, left hemisphere 266.1
1892 Male, age 76, both hemispheres 264.9
2249 Male, age 74, both hemispheres 242.7
Hippocampus, CA3
nTPM: 332.5
2137 Male, age 80, left hemisphere 444.6
2620 Female, age 94, left hemisphere 357.6
2861 Female, age 67, both hemispheres 337.4
1867 Male, age 76, both hemispheres 292.2
1891 Female, age 85, both hemispheres 291.8
2436 Male, age 74, both hemispheres 271.1
Parahippocampal cortex
nTPM: 278.4
2245 Female, age 91, both hemispheres 319.5
2018 Male, age 76, both hemispheres 298.7
1850 Male, age 80, both hemispheres 285.5
2622 Female, age 67, right hemisphere 282.5
2692 Male, age 74, both hemispheres 281.9
1933 Female, age 85, both hemispheres 279.0
2693 Female, age 94, both hemispheres 278.3
2532 Female, age 72, left hemisphere 271.5
1990 Female, age 91, right hemisphere 261.2
2250 Female, age 67, right hemisphere 226.0
Perirhinal gyrus
nTPM: 265.5
1847 Female, age 91, left hemisphere 285.1
1794 Male, age 80, right hemisphere 276.2
1841 Female, age 85, right hemisphere 267.2
2521 Female, age 94, right hemisphere 261.7
2848 Male, age 76, right hemisphere 237.2
Subiculum
nTPM: 294.6
2729 Female, age 91, right hemisphere 326.5
2438 Female, age 94, left hemisphere 314.0
1901 Male, age 80, both hemispheres 309.4
2042 Male, age 76, both hemispheres 303.7
1977 Female, age 85, both hemispheres 257.6
2619 Male, age 74, both hemispheres 256.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 145.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 145.6
Samples: 255

Max nTPM: 228.2
Min nTPM: 80.5
Std nTPM: 28.4
Median nTPM: 144.2
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 228.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 222.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 222.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 216.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 215.0
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 213.0
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 211.9
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 208.3
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 207.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 205.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 202.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 100.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 100.7
FF:10153-102I9 76 years, female 113.2
FF:10169-103B7 60 years, female 88.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 102.3
Pig sample Sample description nTPM
Subiculum
nTPM: 80.0
Samples: 4

Max nTPM: 102.2
Min nTPM: 67.1
Sample A Female 102.2
Sample B Female 67.1
Sample C Male 83.7
Sample D Male 67.1
Dorsal hippocampus
nTPM: 98.8
Samples: 4

Max nTPM: 119.2
Min nTPM: 76.2
Sample A Female 119.2
Sample B Female 111.6
Sample C Male 76.2
Sample D Male 88.3
Entorhinal cortex
nTPM: 86.9
Samples: 4

Max nTPM: 99.3
Min nTPM: 78.0
Sample A Female 89.1
Sample B Female 78.0
Sample C Male 99.3
Sample D Male 81.1
Ventral hippocampus
nTPM: 102.3
Samples: 4

Max nTPM: 139.6
Min nTPM: 70.4
Sample A Female 82.6
Sample B Female 70.4
Sample C Male 116.5
Sample D Male 139.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 89.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 88.0
Samples: 4

Max nTPM: 92.1
Min nTPM: 85.7
Sample A Male 87.6
Sample B Male 85.7
Sample C Female 86.4
Sample D Female 92.1
Hippocampal formation
nTPM: 89.5
Samples: 4

Max nTPM: 100.4
Min nTPM: 82.3
Sample A Male 82.3
Sample B Male 91.6
Sample C Female 100.4
Sample D Female 83.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 17.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 17.1
68844235 Antisense, RP_050222_01_B09, Mouse strain C57BL/6J (56 days, male) 17.1

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