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  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:138.3 nTPM
FANTOM5:142.5 Scaled Tags Per Million
Pig:135.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA022034Antibody HPA022901
Glial cells Not detectedLow
Neuronal cells LowLow





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 138.3
Samples: 300

Max nTPM: 237.8
Min nTPM: 75.8
Std nTPM: 27.4
Median nTPM: 134.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 237.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 220.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 218.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 211.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 209.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 208.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 204.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 204.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 203.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 200.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 195.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 193.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 190.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 189.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 188.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 188.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 187.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 187.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 187.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 186.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 186.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 185.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 185.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 184.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 183.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 181.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 181.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 179.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 178.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 178.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 177.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 176.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 174.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 173.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 171.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 171.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 171.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 171.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 171.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 170.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 170.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 165.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 165.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 165.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 164.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 164.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 164.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 163.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 163.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 163.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 163.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 163.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 162.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 162.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 160.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 160.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 160.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 159.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 159.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 158.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 158.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 157.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 157.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 157.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 157.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 157.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 157.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 156.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 156.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 156.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 155.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 155.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 155.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 155.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 155.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 155.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 153.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 153.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 152.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 152.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 152.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 152.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 152.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 151.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 151.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 151.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 150.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 150.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 150.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 150.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 149.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 149.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 148.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 148.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 148.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 147.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 146.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 146.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 145.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 145.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 145.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 145.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 145.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 145.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 144.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 144.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 144.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 143.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 143.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 143.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 143.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 143.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 142.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 142.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 142.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 142.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 141.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 141.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 141.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 140.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 140.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 140.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 140.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 140.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 140.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 140.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 139.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 138.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 138.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 138.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 138.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 137.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 137.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 137.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 137.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 136.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 136.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 136.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 136.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 135.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 135.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 135.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 135.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 135.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 135.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 135.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 135.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 134.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 134.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 134.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 134.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 134.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 133.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 133.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 133.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 133.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 133.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 133.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 132.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 132.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 132.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 132.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 131.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 131.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 131.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 131.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 130.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 130.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 130.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 130.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 130.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 130.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 129.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 129.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 129.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 129.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 129.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 128.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 128.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 128.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 128.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 128.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 128.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 128.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 127.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 127.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 127.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 127.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 126.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 126.5
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 126.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 126.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 126.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 125.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 125.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 125.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 125.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 125.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 125.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 125.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 125.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 124.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 124.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 124.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 124.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 124.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 124.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 124.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 124.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 124.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 123.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 123.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 123.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 122.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 122.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 122.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 122.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 122.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 122.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 122.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 121.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 121.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 120.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 120.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 120.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 120.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 119.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 119.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 119.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 119.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 118.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 118.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 118.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 117.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 117.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 117.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 116.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 116.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 116.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 116.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 116.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 115.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 115.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 115.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 114.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 114.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 114.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 113.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 112.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 112.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 112.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 111.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 111.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 111.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 110.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 110.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 110.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 109.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 109.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 108.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 108.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 107.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 107.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 107.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 107.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 106.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 106.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 106.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 106.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 105.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 105.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 105.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 104.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 104.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 104.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 103.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 102.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 102.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 102.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 101.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 101.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 100.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 99.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 98.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 98.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 98.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 97.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 97.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 96.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 96.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 95.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 94.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 94.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 94.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 94.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 93.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 89.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 88.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 86.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 75.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

142.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 142.5
FF:10164-103B2 76 years, female 142.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.2
Pig sample Sample description nTPM
Caudate
nTPM: 135.2
Samples: 4

Max nTPM: 171.4
Min nTPM: 89.9
Sample A Female 89.9
Sample B Female 138.6
Sample C Male 171.4
Sample D Male 140.8

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