HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.9 nTPM
HPA Brain:28.2 nTPM
GTEx:45.9 nTPM
FANTOM5:103.9 Scaled Tags Per Million
Pig:2.2 nTPM
Mouse:11.9 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 28.2
Sample id Sample description nTPM
Hippocampus
nTPM: 17.9
2621 Female, age 67, right hemisphere 27.8
2529 Female, age 94, left hemisphere 20.4
1898 Male, age 80, left hemisphere 19.8
1855 Male, age 76, left hemisphere 16.0
2148 Female, age 91, left hemisphere 12.0
1911 Female, age 85, right hemisphere 11.8
Dentate gyrus
nTPM: 22.6
2530 Female, age 94, left hemisphere 36.2
2246 Female, age 85, both hemispheres 30.8
2528 Male, age 74, both hemispheres 24.0
2010 Male, age 76, both hemispheres 22.6
2531 Female, age 67, both hemispheres 12.1
1927 Female, age 91, both hemispheres 9.8
Entorhinal gyrus
nTPM: 27.7
2686 Male, age 75, right hemisphere 48.4
2117 Female, age 91, right hemisphere 33.0
2764 Male, age 80, right hemisphere 24.4
1938 Female, age 85, left hemisphere 20.9
1787 Male, age 76, left hemisphere 20.1
2613 Female, age 94, left hemisphere 19.5
Hippocampus, CA1
nTPM: 21.7
2527 Male, age 74, both hemispheres 46.6
2045 Male, age 76, both hemispheres 18.1
2082 Female, age 91, right hemisphere 16.6
2749 Male, age 80, left hemisphere 15.5
1873 Female, age 85, both hemispheres 11.5
Hippocampus, CA2
nTPM: 24.4
2249 Male, age 74, both hemispheres 46.3
1940 Female, age 85, left hemisphere 35.6
2437 Female, age 94, left hemisphere 19.3
1963 Male, age 80, left hemisphere 17.3
2113 Female, age 91, right hemisphere 15.7
1892 Male, age 76, both hemispheres 12.2
Hippocampus, CA3
nTPM: 28.2
2436 Male, age 74, both hemispheres 80.1
2137 Male, age 80, left hemisphere 25.3
1867 Male, age 76, both hemispheres 19.8
2620 Female, age 94, left hemisphere 16.7
1891 Female, age 85, both hemispheres 15.6
2861 Female, age 67, both hemispheres 11.6
Parahippocampal cortex
nTPM: 25.9
2250 Female, age 67, right hemisphere 39.9
1850 Male, age 80, both hemispheres 32.0
2018 Male, age 76, both hemispheres 32.0
2692 Male, age 74, both hemispheres 31.0
2622 Female, age 67, right hemisphere 30.4
2532 Female, age 72, left hemisphere 29.7
2693 Female, age 94, both hemispheres 19.3
1933 Female, age 85, both hemispheres 17.9
2245 Female, age 91, both hemispheres 14.2
1990 Female, age 91, right hemisphere 12.3
Perirhinal gyrus
nTPM: 20.9
1794 Male, age 80, right hemisphere 40.2
2848 Male, age 76, right hemisphere 17.8
2521 Female, age 94, right hemisphere 17.2
1841 Female, age 85, right hemisphere 16.7
1847 Female, age 91, left hemisphere 12.4
Subiculum
nTPM: 20.4
2619 Male, age 74, both hemispheres 29.1
2042 Male, age 76, both hemispheres 21.1
2438 Female, age 94, left hemisphere 20.6
1901 Male, age 80, both hemispheres 19.3
2729 Female, age 91, right hemisphere 17.2
1977 Female, age 85, both hemispheres 15.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 45.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 45.9
Samples: 255

Max nTPM: 776.8
Min nTPM: 2.0
Std nTPM: 92.9
Median nTPM: 19.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 776.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 690.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 607.8
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 525.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 402.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 363.3
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 334.9
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 275.5
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 223.6
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 173.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 169.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 103.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 103.9
FF:10169-103B7 60 years, female 119.4
FF:10153-102I9 76 years, female 88.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 2.2
Pig sample Sample description nTPM
Subiculum
nTPM: 1.2
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.9
Sample A Female 1.6
Sample B Female 0.9
Sample C Male 1.0
Sample D Male 1.2
Dorsal hippocampus
nTPM: 2.2
Samples: 4

Max nTPM: 3.2
Min nTPM: 1.6
Sample A Female 3.2
Sample B Female 1.6
Sample C Male 1.6
Sample D Male 2.4
Entorhinal cortex
nTPM: 2.2
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.9
Sample A Female 2.1
Sample B Female 2.3
Sample C Male 1.9
Sample D Male 2.6
Ventral hippocampus
nTPM: 1.3
Samples: 4

Max nTPM: 1.7
Min nTPM: 0.7
Sample A Female 1.2
Sample B Female 0.7
Sample C Male 1.7
Sample D Male 1.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 11.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 11.9
Samples: 4

Max nTPM: 13.4
Min nTPM: 10.1
Sample A Male 12.7
Sample B Male 10.1
Sample C Female 13.4
Sample D Female 11.4
Hippocampal formation
nTPM: 11.5
Samples: 4

Max nTPM: 13.4
Min nTPM: 10.4
Sample A Male 13.4
Sample B Male 10.4
Sample C Female 11.0
Sample D Female 11.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
68443232 Antisense, RP_050111_01_F02, Mouse strain C57BL/6J (56 days, male) 0.2

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