MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:181.1 nTPM
HPA Brain:166.3 nTPM
GTEx:181.1 nTPM
FANTOM5:202.2 Scaled Tags Per Million
Pig:1.7 nTPM
Mouse:25.8 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 166.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 90.5
2586 Male, age 75, left hemisphere 285.9
2019 Male, age 18, unknown 108.8
2828 Female, age 72, unknown 101.5
2666 Male, age 74, left hemisphere 84.7
1833 Male, age 53, unknown 62.6
1827 Male, age 72, unknown 59.9
1870 Female, age 42, unknown 59.9
1830 Male, age 51, unknown 55.9
2411 Female, age 72, unknown 47.0
2219 Male, age 76, both hemispheres 38.9
Dorsal raphe nucleus
nTPM: 114.2
2047 Male, age 72, unknown 227.6
1828 Male, age 53, unknown 140.6
2016 Female, age 72, unknown 78.5
2750 Male, age 76, both hemispheres 68.8
2298 Female, age 72, unknown 55.2
Inferior colliculus
nTPM: 166.3
2097 Female, age 72, unknown 246.7
1890 Male, age 53, unknown 224.0
2849 Male, age 72, unknown 104.2
1848 Female, age 42, unknown 90.2
Median raphe nucleus
nTPM: 114.3
2220 Male, age 76, midline 114.3
Periaquaductal grey, anterior
nTPM: 73.8
2502 Female, age 75, unknown 97.0
1795 Male, age 51, unknown 75.3
1947 Male, age 18, unknown 49.0
Periaquaductal grey, dorsal
nTPM: 75.3
2850 Male, age 76, both hemispheres 127.3
2464 Female, age 72, unknown 74.0
1840 Male, age 53, unknown 57.1
1831 Male, age 72, unknown 42.8
Periaquaductal grey, lateral
nTPM: 70.3
2140 Male, age 76, both hemispheres 92.4
2053 Male, age 18, unknown 80.8
2272 Male, age 74, both hemispheres 37.7
Pretectal area
nTPM: 49.9
1817 Female, age 42, unknown 103.5
2667 Female, age 75, unknown 67.4
2825 Male, age 18, unknown 50.9
2407 Male, age 75, both hemispheres 50.8
1944 Female, age 72, unknown 50.7
2007 Male, age 72, unknown 48.1
1816 Male, age 51, unknown 43.0
2316 Male, age 76, right hemisphere 39.6
2224 Female, age 72, unknown 38.6
1815 Male, age 53, unknown 29.4
2273 Male, age 74, both hemispheres 27.3
Red nucleus
nTPM: 113.3
2725 Female, age 75, unknown 194.3
1821 Female, age 72, unknown 132.0
2823 Male, age 76, right hemisphere 131.9
2584 Male, age 75, left hemisphere 129.7
2769 Male, age 72, unknown 129.2
2227 Male, age 72, unknown 120.1
2785 Male, age 18, unknown 103.5
1954 Female, age 42, unknown 99.5
2503 Female, age 72, unknown 93.3
1865 Male, age 51, unknown 88.9
2588 Male, age 74, left hemisphere 71.7
1904 Male, age 53, unknown 65.6
Substantia nigra
nTPM: 93.7
1941 Male, age 53, unknown 155.3
2409 Female, age 72, unknown 154.6
1851 Male, age 51, unknown 136.8
1916 Female, age 42, unknown 111.8
1889 Female, age 72, unknown 83.2
2699 Male, age 18, unknown 78.2
2241 Male, age 72, unknown 74.7
2583 Male, age 75, right hemisphere 60.0
2590 Female, age 75, unknown 48.1
2665 Male, age 74, both hemispheres 34.2
Superior colliculus
nTPM: 46.0
1913 Female, age 42, unknown 60.8
1839 Male, age 51, unknown 59.9
1796 Male, age 53, unknown 54.5
1895 Male, age 76, right hemisphere 50.0
2087 Female, age 72, unknown 48.7
1995 Male, age 72, unknown 47.8
2664 Male, age 75, both hemispheres 44.5
2261 Male, age 18, unknown 37.8
2587 Male, age 74, left hemisphere 34.6
2668 Female, age 75, unknown 21.7
Ventral tegmental area
nTPM: 93.1
1915 Female, age 42, unknown 196.5
2223 Female, age 72, unknown 86.6
2218 Male, age 76, both hemispheres 71.5
2410 Female, age 72, unknown 69.5
2021 Male, age 53, unknown 68.5
1942 Male, age 51, unknown 66.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 181.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 181.1
Samples: 183

Max nTPM: 3368.8
Min nTPM: 5.1
Std nTPM: 386.2
Median nTPM: 80.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 3368.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 2610.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 2048.8
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 1655.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 1276.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1107.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 789.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 718.4
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 642.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 527.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 493.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 202.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 202.2
FF:10158-103A5 76 years, female 202.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1.7
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.4
Sample A Female 1.4
Sample B Female 1.5
Sample C Male 1.5
Sample D Male 2.5
Midbrain
nTPM: 1.3
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.9
Sample A Female 0.9
Sample B Female 1.8
Sample C Male 1.2
Sample D Male 1.4
Periaqueductal gray
nTPM: 1.1
Samples: 3

Max nTPM: 1.2
Min nTPM: 1.0
Sample B Female 1.0
Sample C Male 1.2
Sample D Male 1.1
Superior colliculi
nTPM: 1.3
Samples: 4

Max nTPM: 1.5
Min nTPM: 0.8
Sample A Female 1.5
Sample B Female 0.8
Sample C Male 1.5
Sample D Male 1.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 25.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.8
Samples: 4

Max nTPM: 27.4
Min nTPM: 24.2
Sample A Male 25.5
Sample B Male 27.4
Sample C Female 24.2
Sample D Female 25.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68443232 Antisense, RP_050111_01_F02, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo