HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:31.7 nTPM
HPA Brain:32.2 nTPM
GTEx:31.7 nTPM
FANTOM5:139.3 Scaled Tags Per Million
Pig:25.7 nTPM
Mouse:23.0 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039053Antibody HPA039054
Glial cells Not detectedNot detected
Neuronal cells MediumLow




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 32.2
Sample id Sample description nTPM
Hippocampus
nTPM: 30.6
1898 Male, age 80, left hemisphere 41.3
1855 Male, age 76, left hemisphere 30.5
1911 Female, age 85, right hemisphere 30.1
2148 Female, age 91, left hemisphere 30.1
2529 Female, age 94, left hemisphere 27.6
2621 Female, age 67, right hemisphere 24.2
Dentate gyrus
nTPM: 29.4
2010 Male, age 76, both hemispheres 34.9
2528 Male, age 74, both hemispheres 31.8
1927 Female, age 91, both hemispheres 30.0
2530 Female, age 94, left hemisphere 28.2
2246 Female, age 85, both hemispheres 26.9
2531 Female, age 67, both hemispheres 24.4
Entorhinal gyrus
nTPM: 27.4
2117 Female, age 91, right hemisphere 34.2
1938 Female, age 85, left hemisphere 29.9
2686 Male, age 75, right hemisphere 27.9
1787 Male, age 76, left hemisphere 25.6
2764 Male, age 80, right hemisphere 24.3
2613 Female, age 94, left hemisphere 22.6
Hippocampus, CA1
nTPM: 32.2
2749 Male, age 80, left hemisphere 41.9
1873 Female, age 85, both hemispheres 33.2
2527 Male, age 74, both hemispheres 31.7
2082 Female, age 91, right hemisphere 29.9
2045 Male, age 76, both hemispheres 24.1
Hippocampus, CA2
nTPM: 31.0
2249 Male, age 74, both hemispheres 39.3
1963 Male, age 80, left hemisphere 33.5
1940 Female, age 85, left hemisphere 30.4
2113 Female, age 91, right hemisphere 29.5
1892 Male, age 76, both hemispheres 28.8
2437 Female, age 94, left hemisphere 24.6
Hippocampus, CA3
nTPM: 29.1
2436 Male, age 74, both hemispheres 33.9
1891 Female, age 85, both hemispheres 32.5
2137 Male, age 80, left hemisphere 31.6
1867 Male, age 76, both hemispheres 30.1
2620 Female, age 94, left hemisphere 23.7
2861 Female, age 67, both hemispheres 23.1
Parahippocampal cortex
nTPM: 25.5
1850 Male, age 80, both hemispheres 30.5
1990 Female, age 91, right hemisphere 28.3
2693 Female, age 94, both hemispheres 27.4
2250 Female, age 67, right hemisphere 26.8
2692 Male, age 74, both hemispheres 26.6
1933 Female, age 85, both hemispheres 24.9
2018 Male, age 76, both hemispheres 24.9
2245 Female, age 91, both hemispheres 24.5
2532 Female, age 72, left hemisphere 22.7
2622 Female, age 67, right hemisphere 18.5
Perirhinal gyrus
nTPM: 25.3
2521 Female, age 94, right hemisphere 28.7
1847 Female, age 91, left hemisphere 27.0
1794 Male, age 80, right hemisphere 25.5
1841 Female, age 85, right hemisphere 23.5
2848 Male, age 76, right hemisphere 22.0
Subiculum
nTPM: 28.6
1901 Male, age 80, both hemispheres 36.2
2729 Female, age 91, right hemisphere 30.7
2042 Male, age 76, both hemispheres 29.8
1977 Female, age 85, both hemispheres 28.2
2619 Male, age 74, both hemispheres 23.8
2438 Female, age 94, left hemisphere 23.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 31.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 31.7
Samples: 255

Max nTPM: 65.4
Min nTPM: 15.5
Std nTPM: 8.5
Median nTPM: 30.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 65.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 60.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 57.0
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 55.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 54.9
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 53.8
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 53.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 53.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 50.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 50.1
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 48.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 139.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 139.3
FF:10169-103B7 60 years, female 142.2
FF:10153-102I9 76 years, female 136.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 25.7
Pig sample Sample description nTPM
Subiculum
nTPM: 22.1
Samples: 4

Max nTPM: 23.1
Min nTPM: 20.7
Sample A Female 23.1
Sample B Female 22.6
Sample C Male 20.7
Sample D Male 22.0
Dorsal hippocampus
nTPM: 25.7
Samples: 4

Max nTPM: 32.2
Min nTPM: 19.0
Sample A Female 28.6
Sample B Female 23.0
Sample C Male 32.2
Sample D Male 19.0
Entorhinal cortex
nTPM: 19.9
Samples: 4

Max nTPM: 24.2
Min nTPM: 16.6
Sample A Female 19.4
Sample B Female 24.2
Sample C Male 19.5
Sample D Male 16.6
Ventral hippocampus
nTPM: 21.2
Samples: 4

Max nTPM: 22.0
Min nTPM: 20.3
Sample A Female 20.4
Sample B Female 20.3
Sample C Male 22.0
Sample D Male 22.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 23.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 15.2
Samples: 4

Max nTPM: 19.4
Min nTPM: 13.3
Sample A Male 19.4
Sample B Male 13.8
Sample C Female 14.3
Sample D Female 13.3
Hippocampal formation
nTPM: 23.0
Samples: 4

Max nTPM: 30.1
Min nTPM: 16.9
Sample A Male 16.9
Sample B Male 24.0
Sample C Female 30.1
Sample D Female 20.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.9
68193030 Antisense, RP_040825_01_G03, Mouse strain C57BL/6J (56 days, male) 1.5
70919376 Antisense, RP_050713_01_B12, Mouse strain C57BL/6J (56 days, male) 0.3

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