MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.2 nTPM
HPA Brain:111.7 nTPM
GTEx:64.2 nTPM
FANTOM5:26.7 Scaled Tags Per Million
Pig:63.2 nTPM
Mouse:38.1 nTPM
Allen mouse:1.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 111.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 104.0
2586 Male, age 75, left hemisphere 168.4
2219 Male, age 76, both hemispheres 117.8
2828 Female, age 72, unknown 116.9
1827 Male, age 72, unknown 107.1
2666 Male, age 74, left hemisphere 101.9
2019 Male, age 18, unknown 100.4
1833 Male, age 53, unknown 88.0
2411 Female, age 72, unknown 83.4
1870 Female, age 42, unknown 81.0
1830 Male, age 51, unknown 74.8
Dorsal raphe nucleus
nTPM: 87.6
2047 Male, age 72, unknown 98.6
1828 Male, age 53, unknown 88.3
2298 Female, age 72, unknown 87.4
2016 Female, age 72, unknown 82.3
2750 Male, age 76, both hemispheres 81.5
Inferior colliculus
nTPM: 97.3
1848 Female, age 42, unknown 98.4
2849 Male, age 72, unknown 97.6
1890 Male, age 53, unknown 96.6
2097 Female, age 72, unknown 96.4
Median raphe nucleus
nTPM: 77.5
2220 Male, age 76, midline 77.5
Periaquaductal grey, anterior
nTPM: 111.7
2502 Female, age 75, unknown 120.0
1795 Male, age 51, unknown 117.7
1947 Male, age 18, unknown 97.5
Periaquaductal grey, dorsal
nTPM: 86.2
1840 Male, age 53, unknown 108.2
2464 Female, age 72, unknown 92.2
1831 Male, age 72, unknown 82.1
2850 Male, age 76, both hemispheres 62.2
Periaquaductal grey, lateral
nTPM: 74.6
2053 Male, age 18, unknown 86.5
2272 Male, age 74, both hemispheres 70.6
2140 Male, age 76, both hemispheres 66.6
Pretectal area
nTPM: 106.1
1816 Male, age 51, unknown 141.3
2007 Male, age 72, unknown 140.8
1944 Female, age 72, unknown 136.9
1817 Female, age 42, unknown 133.0
1815 Male, age 53, unknown 112.0
2667 Female, age 75, unknown 102.0
2407 Male, age 75, both hemispheres 91.1
2224 Female, age 72, unknown 82.6
2825 Male, age 18, unknown 78.9
2316 Male, age 76, right hemisphere 77.6
2273 Male, age 74, both hemispheres 70.4
Red nucleus
nTPM: 84.6
2584 Male, age 75, left hemisphere 109.4
2785 Male, age 18, unknown 109.4
2588 Male, age 74, left hemisphere 93.3
2769 Male, age 72, unknown 86.3
2503 Female, age 72, unknown 83.5
2227 Male, age 72, unknown 82.1
2725 Female, age 75, unknown 81.0
2823 Male, age 76, right hemisphere 77.0
1821 Female, age 72, unknown 74.9
1904 Male, age 53, unknown 74.1
1954 Female, age 42, unknown 73.7
1865 Male, age 51, unknown 70.1
Substantia nigra
nTPM: 111.5
2665 Male, age 74, both hemispheres 164.6
1916 Female, age 42, unknown 132.6
1889 Female, age 72, unknown 121.0
1851 Male, age 51, unknown 118.4
1941 Male, age 53, unknown 109.1
2583 Male, age 75, right hemisphere 105.4
2699 Male, age 18, unknown 99.5
2590 Female, age 75, unknown 95.6
2409 Female, age 72, unknown 91.0
2241 Male, age 72, unknown 77.2
Superior colliculus
nTPM: 104.0
2664 Male, age 75, both hemispheres 142.7
2087 Female, age 72, unknown 122.7
2668 Female, age 75, unknown 112.9
1796 Male, age 53, unknown 111.9
2261 Male, age 18, unknown 110.5
1839 Male, age 51, unknown 91.4
1995 Male, age 72, unknown 90.0
2587 Male, age 74, left hemisphere 88.7
1913 Female, age 42, unknown 85.2
1895 Male, age 76, right hemisphere 83.8
Ventral tegmental area
nTPM: 97.6
1942 Male, age 51, unknown 111.3
1915 Female, age 42, unknown 103.9
2218 Male, age 76, both hemispheres 103.5
2410 Female, age 72, unknown 102.0
2223 Female, age 72, unknown 82.7
2021 Male, age 53, unknown 82.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 64.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.2
Samples: 183

Max nTPM: 142.7
Min nTPM: 16.4
Std nTPM: 24.9
Median nTPM: 59.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 142.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 127.5
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 126.6
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 124.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 119.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 117.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 116.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 114.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 110.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 108.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 107.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 26.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.7
FF:10158-103A5 76 years, female 26.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 63.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 55.2
Samples: 4

Max nTPM: 64.2
Min nTPM: 44.7
Sample A Female 62.9
Sample B Female 48.9
Sample C Male 64.2
Sample D Male 44.7
Midbrain
nTPM: 62.2
Samples: 4

Max nTPM: 80.3
Min nTPM: 50.1
Sample A Female 57.3
Sample B Female 50.1
Sample C Male 80.3
Sample D Male 61.2
Periaqueductal gray
nTPM: 48.3
Samples: 3

Max nTPM: 54.4
Min nTPM: 41.8
Sample B Female 48.8
Sample C Male 54.4
Sample D Male 41.8
Superior colliculi
nTPM: 63.2
Samples: 4

Max nTPM: 66.3
Min nTPM: 59.1
Sample A Female 59.1
Sample B Female 61.7
Sample C Male 65.5
Sample D Male 66.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 38.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.1
Samples: 4

Max nTPM: 44.3
Min nTPM: 34.3
Sample A Male 44.3
Sample B Male 34.6
Sample C Female 34.3
Sample D Female 39.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
69169469 Antisense, RP_050321_03_F04, Mouse strain C57BL/6J (56 days, male) 1.3

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