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  • AGAP3
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:220.0 nTPM
HPA Brain:212.5 nTPM
GTEx:220.0 nTPM
FANTOM5:143.6 Scaled Tags Per Million
Pig:121.2 nTPM
Mouse:88.5 nTPM
Allen mouse:5.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

212.5
Sample id Sample description nTPM
Amygdala
nTPM: 145.1
2814 Male, age 76, right hemisphere 172.2
2517 Female, age 94, left hemisphere 164.2
1987 Female, age 91, left hemisphere 155.0
2514 Male, age 75, right hemisphere 119.7
2695 Female, age 67, right hemisphere 114.7
Basal amygdala
nTPM: 212.5
2827 Female, age 67, right hemisphere 249.2
2685 Female, age 94, left hemisphere 241.1
2243 Female, age 91, right hemisphere 225.0
2110 Male, age 80, left hemisphere 203.6
2609 Male, age 75, right hemisphere 182.4
1955 Male, age 76, both hemispheres 173.6
Central amygdala
nTPM: 196.7
2826 Female, age 94, left hemisphere 296.3
2239 Male, age 80, left hemisphere 214.8
2701 Female, age 91, right hemisphere 159.9
1905 Male, age 76, both hemispheres 158.7
2515 Male, age 75, right hemisphere 154.0
Corticomedial amygdala
nTPM: 187.4
2535 Female, age 67, right hemisphere 243.7
2829 Male, age 80, left hemisphere 220.8
2242 Female, age 91, right hemisphere 193.8
2429 Female, age 94, left hemisphere 182.2
2428 Male, age 75, right hemisphere 142.0
2240 Male, age 76, both hemispheres 141.7
Lateral amygdala
nTPM: 205.9
2534 Female, age 94, left hemisphere 291.9
2256 Male, age 80, left hemisphere 222.5
2830 Female, age 67, right hemisphere 201.7
2255 Female, age 91, right hemisphere 191.7
1883 Male, age 76, both hemispheres 189.9
2516 Male, age 75, right hemisphere 137.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

220.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 220.0
Samples: 181

Max nTPM: 493.9
Min nTPM: 76.2
Std nTPM: 74.4
Median nTPM: 211.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 493.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 452.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 450.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 418.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 377.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 377.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 373.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 366.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 363.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 359.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 356.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 348.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 330.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 329.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 329.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 329.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 327.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 317.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 315.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 313.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 311.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 309.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 303.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 301.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 301.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 298.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 295.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 294.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 293.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 286.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 286.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 286.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 285.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 284.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 277.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 277.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 273.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 271.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 271.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 270.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 270.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 268.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 266.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 266.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 261.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 256.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 256.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 255.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 251.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 250.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 249.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 247.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 246.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 243.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 241.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 241.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 241.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 241.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 241.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 240.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 239.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 239.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 238.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 238.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 238.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 233.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 230.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 230.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 230.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 229.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 228.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 227.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 227.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 227.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 223.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 222.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 222.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 222.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 220.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 220.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 219.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 217.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 217.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 217.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 216.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 215.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 213.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 213.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 212.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 212.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 211.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 210.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 210.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 209.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 209.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 206.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 206.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 206.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 206.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 205.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 205.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 204.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 204.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 204.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 203.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 203.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 201.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 201.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 200.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 200.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 199.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 198.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 198.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 196.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 194.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 194.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 192.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 192.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 192.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 191.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 189.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 189.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 187.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 186.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 186.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 185.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 185.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 184.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 181.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 177.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 175.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 174.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 174.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 173.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 172.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 168.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 168.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 167.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 166.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 160.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 158.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 158.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 157.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 155.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 152.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 152.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 152.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 151.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 149.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 145.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 144.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 143.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 143.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 142.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 141.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 140.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 138.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 136.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 136.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 135.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 134.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 134.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 131.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 129.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 128.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 128.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 123.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 119.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 118.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 117.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 114.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 112.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 112.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 110.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 109.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 105.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 99.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 94.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 90.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 88.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 76.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

143.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 143.6
FF:10151-102I7 76 years, female 143.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

121.2
Pig sample Sample description nTPM
Amygdala
nTPM: 121.3
Samples: 4

Max nTPM: 150.4
Min nTPM: 98.9
Sample A Female 150.4
Sample B Female 98.9
Sample C Male 131.8
Sample D Male 103.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

88.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 88.6
Samples: 4

Max nTPM: 109.9
Min nTPM: 77.4
Sample A Male 86.9
Sample B Male 80.0
Sample C Female 109.9
Sample D Female 77.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.4
2089 Antisense, RP_Baylor_103357, Mouse strain C57BL/6J (56 days, male) 5.4
2090 Antisense, RP_Baylor_103357, Mouse strain C57BL/6J (56 days, male) 1.7

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