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TISSUE RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:203.1 nTPM
GTEx:203.1 nTPM
FANTOM5:258.9 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

203.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 203.1
Samples: 105

Max nTPM: 254.5
Min nTPM: 149.0
Std nTPM: 22.3
Median nTPM:
229_1 69 years, female 254.5
145_1 84 years, male 249.5
347_1 72 years, male 247.1
246_1 77 years, male 242.5
414_1 84 years, female 241.0
375_1 74 years, female 237.4
117_1 61 years, male 236.8
189_1 76 years, male 234.8
237_1 82 years, male 234.3
177_1 74 years, male 231.1
376_1 75 years, female 231.1
311_1 78 years, male 230.9
265_1 87 years, male 230.8
386_1 76 years, male 229.4
324_1 76 years, male 229.1
89_1 63 years, male 227.7
321_1 62 years, female 227.7
447_1 81 years, male 226.9
526_1 61 years, male 225.1
9_1 66 years, female 224.5
307_1 66 years, female 223.8
42_1 85 years, male 221.7
415_1 77 years, female 221.7
218_1 71 years, female 220.6
266_1 85 years, male 220.5
35_1 74 years, female 220.1
384_1 83 years, male 219.7
172_1 72 years, female 219.4
32_1 67 years, male 218.0
115_1 83 years, male 217.7
405_1 91 years, male 217.7
99_1 64 years, male 216.9
379_1 60 years, male 215.6
377_1 82 years, female 214.4
501_1 88 years, male 214.2
466_1 57 years, female 214.1
396_1 62 years, male 213.6
316_1 62 years, male 213.2
6_1 73 years, female 212.3
348_1 84 years, male 210.7
315_1 62 years, female 210.6
142_1 61 years, female 210.5
137_1 83 years, male 210.0
468_1 89 years, male 209.8
18_1 88 years, male 209.4
162_1 79 years, female 209.2
322_1 76 years, male 208.3
425_1 59 years, female 208.0
81_1 67 years, male 207.0
389_1 86 years, female 207.0
404_1 82 years, female 205.7
2_1 77 years, female 204.6
254_1 77 years, female 204.5
153_1 70 years, female 204.4
126_1 63 years, male 203.8
163_1 78 years, male 203.4
119_1 70 years, female 203.3
335_1 73 years, female 200.0
518_1 75 years, female 198.6
17_1 71 years, male 198.1
413_1 59 years, female 198.1
317_1 60 years, male 198.0
41_1 94 years, female 196.1
173_1 67 years, male 196.1
251_1 78 years, male 194.6
352_1 62 years, male 194.5
288_1 66 years, female 193.3
109_1 81 years, female 192.7
243_1 75 years, male 191.5
355_1 70 years, female 189.7
353_1 82 years, female 189.3
354_1 81 years, female 189.1
480_1 63 years, male 188.0
217_1 76 years, male 187.9
264_1 73 years, female 187.9
293_1 68 years, female 187.8
149_1 88 years, male 187.0
406_1 79 years, male 186.6
4_1 88 years, female 186.4
495_1 57 years, female 185.7
286_1 68 years, female 184.5
349_1 83 years, male 184.5
320_1 89 years, female 183.4
490_1 67 years, female 182.1
452_1 88 years, female 182.0
491_1 89 years, female 182.0
517_1 88 years, male 180.0
43_1 64 years, female 179.4
319_1 81 years, male 179.4
291_1 76 years, male 178.5
313_1 79 years, female 177.9
350_1 84 years, female 177.5
499_1 55 years, female 177.0
292_1 71 years, male 175.4
503_1 68 years, male 174.2
351_1 91 years, male 173.2
318_1 68 years, male 172.5
506_1 65 years, male 172.5
120_1 70 years, female 172.2
394_1 75 years, female 165.1
314_1 67 years, male 164.5
139_1 64 years, female 161.7
295_1 61 years, female 161.5
356_1 87 years, female 156.4
308_1 70 years, female 149.0
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RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

258.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 258.9
FF:10030-101E3 24-65 years, mixed 258.9

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