MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:86.2 nTPM
HPA Brain:55.6 nTPM
GTEx:86.2 nTPM
FANTOM5:100.0 Scaled Tags Per Million
Pig:88.1 nTPM
Mouse:44.0 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 55.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.9
2411 Female, age 72, unknown 59.7
1870 Female, age 42, unknown 56.7
1833 Male, age 53, unknown 46.8
1827 Male, age 72, unknown 44.9
1830 Male, age 51, unknown 43.2
2019 Male, age 18, unknown 42.8
2666 Male, age 74, left hemisphere 41.4
2219 Male, age 76, both hemispheres 37.9
2586 Male, age 75, left hemisphere 37.9
2828 Female, age 72, unknown 37.7
Dorsal raphe nucleus
nTPM: 53.5
2298 Female, age 72, unknown 62.8
1828 Male, age 53, unknown 54.0
2047 Male, age 72, unknown 52.6
2750 Male, age 76, both hemispheres 52.0
2016 Female, age 72, unknown 46.3
Inferior colliculus
nTPM: 46.6
2097 Female, age 72, unknown 56.3
1890 Male, age 53, unknown 45.5
1848 Female, age 42, unknown 45.3
2849 Male, age 72, unknown 39.2
Median raphe nucleus
nTPM: 53.3
2220 Male, age 76, midline 53.3
Periaquaductal grey, anterior
nTPM: 47.2
1947 Male, age 18, unknown 51.6
2502 Female, age 75, unknown 46.5
1795 Male, age 51, unknown 43.5
Periaquaductal grey, dorsal
nTPM: 46.6
1840 Male, age 53, unknown 49.4
2850 Male, age 76, both hemispheres 47.6
2464 Female, age 72, unknown 46.7
1831 Male, age 72, unknown 42.6
Periaquaductal grey, lateral
nTPM: 42.3
2053 Male, age 18, unknown 44.6
2140 Male, age 76, both hemispheres 41.9
2272 Male, age 74, both hemispheres 40.5
Pretectal area
nTPM: 48.1
2667 Female, age 75, unknown 57.3
2224 Female, age 72, unknown 56.5
1817 Female, age 42, unknown 52.2
1816 Male, age 51, unknown 50.0
1944 Female, age 72, unknown 49.8
2007 Male, age 72, unknown 47.8
1815 Male, age 53, unknown 47.7
2825 Male, age 18, unknown 47.4
2273 Male, age 74, both hemispheres 45.1
2316 Male, age 76, right hemisphere 44.0
2407 Male, age 75, both hemispheres 31.7
Red nucleus
nTPM: 46.0
1821 Female, age 72, unknown 66.3
1904 Male, age 53, unknown 51.2
1954 Female, age 42, unknown 49.6
2823 Male, age 76, right hemisphere 48.3
1865 Male, age 51, unknown 48.2
2503 Female, age 72, unknown 46.8
2725 Female, age 75, unknown 46.2
2769 Male, age 72, unknown 43.1
2227 Male, age 72, unknown 42.3
2588 Male, age 74, left hemisphere 41.7
2785 Male, age 18, unknown 36.6
2584 Male, age 75, left hemisphere 31.9
Substantia nigra
nTPM: 55.2
2241 Male, age 72, unknown 77.5
1916 Female, age 42, unknown 70.1
1851 Male, age 51, unknown 62.1
2409 Female, age 72, unknown 60.3
1889 Female, age 72, unknown 57.0
2699 Male, age 18, unknown 54.7
1941 Male, age 53, unknown 50.3
2590 Female, age 75, unknown 42.7
2665 Male, age 74, both hemispheres 41.6
2583 Male, age 75, right hemisphere 35.4
Superior colliculus
nTPM: 43.3
1895 Male, age 76, right hemisphere 48.8
2587 Male, age 74, left hemisphere 47.6
2261 Male, age 18, unknown 47.2
2668 Female, age 75, unknown 44.8
1913 Female, age 42, unknown 43.0
1995 Male, age 72, unknown 43.0
1796 Male, age 53, unknown 42.9
2087 Female, age 72, unknown 42.6
1839 Male, age 51, unknown 40.9
2664 Male, age 75, both hemispheres 31.9
Ventral tegmental area
nTPM: 55.6
2410 Female, age 72, unknown 67.7
1915 Female, age 42, unknown 61.8
2218 Male, age 76, both hemispheres 57.1
2223 Female, age 72, unknown 50.2
1942 Male, age 51, unknown 50.1
2021 Male, age 53, unknown 46.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 86.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 86.2
Samples: 183

Max nTPM: 138.8
Min nTPM: 48.5
Std nTPM: 18.0
Median nTPM: 83.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 138.8
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 135.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 126.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 126.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 122.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 122.6
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 122.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 121.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 120.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 120.1
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 119.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 100.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 100.0
FF:10158-103A5 76 years, female 100.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 88.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 79.5
Samples: 4

Max nTPM: 103.8
Min nTPM: 54.1
Sample A Female 103.8
Sample B Female 71.3
Sample C Male 88.7
Sample D Male 54.1
Midbrain
nTPM: 86.3
Samples: 4

Max nTPM: 105.2
Min nTPM: 75.3
Sample A Female 75.3
Sample B Female 76.8
Sample C Male 105.2
Sample D Male 87.8
Periaqueductal gray
nTPM: 67.3
Samples: 3

Max nTPM: 74.6
Min nTPM: 61.2
Sample B Female 66.2
Sample C Male 74.6
Sample D Male 61.2
Superior colliculi
nTPM: 88.1
Samples: 4

Max nTPM: 105.0
Min nTPM: 70.6
Sample A Female 93.9
Sample B Female 70.6
Sample C Male 105.0
Sample D Male 82.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 44.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.0
Samples: 4

Max nTPM: 45.7
Min nTPM: 41.4
Sample A Male 41.4
Sample B Male 44.7
Sample C Female 45.7
Sample D Female 44.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
71493129 Antisense, RP_050913_02_C01, Mouse strain C57BL/6J (56 days, male) 0.4

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