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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:107.6 nTPM
HPA Brain:22.5 nTPM
GTEx:107.6 nTPM
FANTOM5:116.7 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.5
Sample id Sample description nTPM
Amygdala
nTPM: 19.9
2514 Male, age 75, right hemisphere 32.1
1987 Female, age 91, left hemisphere 26.6
2517 Female, age 94, left hemisphere 18.0
2695 Female, age 67, right hemisphere 14.0
2814 Male, age 76, right hemisphere 8.8
Basal amygdala
nTPM: 22.5
2609 Male, age 75, right hemisphere 32.3
2110 Male, age 80, left hemisphere 30.6
2243 Female, age 91, right hemisphere 26.6
2685 Female, age 94, left hemisphere 18.4
1955 Male, age 76, both hemispheres 16.5
2827 Female, age 67, right hemisphere 10.4
Central amygdala
nTPM: 18.0
2239 Male, age 80, left hemisphere 27.5
2515 Male, age 75, right hemisphere 21.8
2701 Female, age 91, right hemisphere 19.1
2826 Female, age 94, left hemisphere 12.4
1905 Male, age 76, both hemispheres 9.0
Corticomedial amygdala
nTPM: 21.2
2829 Male, age 80, left hemisphere 28.6
2428 Male, age 75, right hemisphere 24.0
2242 Female, age 91, right hemisphere 22.6
2240 Male, age 76, both hemispheres 19.2
2429 Female, age 94, left hemisphere 18.4
2535 Female, age 67, right hemisphere 14.3
Lateral amygdala
nTPM: 21.0
2256 Male, age 80, left hemisphere 40.4
2516 Male, age 75, right hemisphere 32.8
2255 Female, age 91, right hemisphere 22.9
2534 Female, age 94, left hemisphere 11.4
1883 Male, age 76, both hemispheres 10.2
2830 Female, age 67, right hemisphere 8.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

107.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 107.6
Samples: 181

Max nTPM: 681.1
Min nTPM: 2.0
Std nTPM: 89.4
Median nTPM: 84.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 681.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 570.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 440.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 314.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 283.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 277.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 273.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 271.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 269.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 259.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 253.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 250.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 245.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 245.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 236.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 206.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 205.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 196.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 196.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 190.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 190.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 186.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 186.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 186.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 183.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 180.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 171.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 167.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 165.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 165.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 164.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 164.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 163.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 163.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 161.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 159.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 155.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 154.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 154.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 154.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 151.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 151.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 142.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 142.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 135.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 133.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 132.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 132.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 130.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 129.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 129.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 128.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 127.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 126.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 126.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 124.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 123.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 122.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 122.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 118.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 118.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 117.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 115.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 115.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 115.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 114.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 111.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 109.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 109.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 106.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 106.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 105.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 104.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 103.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 101.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 100.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 100.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 97.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 95.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 94.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 93.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 92.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 92.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 91.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 90.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 89.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 86.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 86.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 85.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 85.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 84.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 84.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 84.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 83.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 82.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 81.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 80.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 80.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 79.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 79.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 78.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 78.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 77.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 76.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 75.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 74.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 73.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 73.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 72.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 72.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 72.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 71.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 71.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 71.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 70.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 70.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 69.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 68.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 67.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 67.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 67.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 66.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 66.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 65.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 65.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 63.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 63.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 60.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 59.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 59.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 58.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 57.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 54.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 53.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 53.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 51.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 50.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 49.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 49.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 48.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 48.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 47.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 47.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 47.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 45.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 43.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 43.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 43.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 42.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 40.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 40.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 40.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 37.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 37.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 35.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 35.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 34.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 31.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 30.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 29.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 28.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 25.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 23.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 22.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 20.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 17.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 16.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 16.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 16.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 15.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 14.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 14.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 14.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 13.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 13.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 12.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 9.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 9.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 7.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 6.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 2.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

116.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 116.7
FF:10151-102I7 76 years, female 116.7

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