HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:17.7 nTPM
HPA Brain:23.7 nTPM
GTEx:17.7 nTPM
FANTOM5:97.3 Scaled Tags Per Million
Pig:11.0 nTPM
Mouse:456.1 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA035190Antibody HPA055972Antibody CAB017130Antibody CAB040583
Glial cells LowNot detectedNot detectedMedium
Neuronal cells Not detectedNot detectedNot detectedMedium








HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 23.7
Sample id Sample description nTPM
Hippocampus
nTPM: 17.2
2529 Female, age 94, left hemisphere 19.7
2148 Female, age 91, left hemisphere 18.9
1911 Female, age 85, right hemisphere 18.0
1898 Male, age 80, left hemisphere 17.2
2621 Female, age 67, right hemisphere 15.1
1855 Male, age 76, left hemisphere 14.5
Dentate gyrus
nTPM: 16.3
2528 Male, age 74, both hemispheres 22.8
2246 Female, age 85, both hemispheres 17.4
1927 Female, age 91, both hemispheres 15.1
2530 Female, age 94, left hemisphere 15.1
2010 Male, age 76, both hemispheres 14.7
2531 Female, age 67, both hemispheres 12.8
Entorhinal gyrus
nTPM: 19.5
2117 Female, age 91, right hemisphere 23.3
1938 Female, age 85, left hemisphere 22.7
2764 Male, age 80, right hemisphere 20.8
1787 Male, age 76, left hemisphere 18.3
2613 Female, age 94, left hemisphere 16.4
2686 Male, age 75, right hemisphere 15.2
Hippocampus, CA1
nTPM: 18.0
2527 Male, age 74, both hemispheres 21.3
2082 Female, age 91, right hemisphere 18.4
1873 Female, age 85, both hemispheres 18.1
2045 Male, age 76, both hemispheres 16.5
2749 Male, age 80, left hemisphere 15.6
Hippocampus, CA2
nTPM: 17.3
2249 Male, age 74, both hemispheres 26.2
2113 Female, age 91, right hemisphere 18.4
1940 Female, age 85, left hemisphere 16.5
2437 Female, age 94, left hemisphere 16.1
1892 Male, age 76, both hemispheres 13.4
1963 Male, age 80, left hemisphere 13.0
Hippocampus, CA3
nTPM: 17.5
2436 Male, age 74, both hemispheres 26.7
2620 Female, age 94, left hemisphere 18.1
1891 Female, age 85, both hemispheres 17.1
2137 Male, age 80, left hemisphere 14.8
2861 Female, age 67, both hemispheres 14.1
1867 Male, age 76, both hemispheres 13.9
Parahippocampal cortex
nTPM: 19.6
1850 Male, age 80, both hemispheres 22.9
1933 Female, age 85, both hemispheres 22.9
2693 Female, age 94, both hemispheres 20.4
2692 Male, age 74, both hemispheres 20.3
1990 Female, age 91, right hemisphere 19.7
2622 Female, age 67, right hemisphere 19.5
2245 Female, age 91, both hemispheres 19.4
2250 Female, age 67, right hemisphere 18.0
2532 Female, age 72, left hemisphere 17.1
2018 Male, age 76, both hemispheres 16.1
Perirhinal gyrus
nTPM: 23.7
1847 Female, age 91, left hemisphere 24.8
1841 Female, age 85, right hemisphere 24.2
2848 Male, age 76, right hemisphere 24.0
1794 Male, age 80, right hemisphere 22.8
2521 Female, age 94, right hemisphere 22.7
Subiculum
nTPM: 18.6
2729 Female, age 91, right hemisphere 24.2
2619 Male, age 74, both hemispheres 23.6
1977 Female, age 85, both hemispheres 20.7
2438 Female, age 94, left hemisphere 17.2
2042 Male, age 76, both hemispheres 13.0
1901 Male, age 80, both hemispheres 12.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 17.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 17.7
Samples: 255

Max nTPM: 118.0
Min nTPM: 3.4
Std nTPM: 10.2
Median nTPM: 16.3
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 118.0
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 65.0
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 53.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 51.2
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 46.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 38.8
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 34.8
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 33.6
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 33.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 31.9
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 31.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 97.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 97.3
FF:10169-103B7 60 years, female 123.5
FF:10153-102I9 76 years, female 71.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 11.0
Pig sample Sample description nTPM
Subiculum
nTPM: 6.9
Samples: 4

Max nTPM: 17.4
Min nTPM: 2.1
Sample A Female 4.1
Sample B Female 3.9
Sample C Male 17.4
Sample D Male 2.1
Dorsal hippocampus
nTPM: 9.8
Samples: 4

Max nTPM: 17.4
Min nTPM: 3.8
Sample A Female 9.8
Sample B Female 8.0
Sample C Male 17.4
Sample D Male 3.8
Entorhinal cortex
nTPM: 5.0
Samples: 4

Max nTPM: 14.1
Min nTPM: 1.9
Sample A Female 1.9
Sample B Female 2.0
Sample C Male 14.1
Sample D Male 1.9
Ventral hippocampus
nTPM: 11.0
Samples: 4

Max nTPM: 23.7
Min nTPM: 6.1
Sample A Female 7.7
Sample B Female 6.6
Sample C Male 23.7
Sample D Male 6.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 456.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 433.0
Samples: 4

Max nTPM: 495.4
Min nTPM: 380.0
Sample A Male 438.5
Sample B Male 418.0
Sample C Female 495.4
Sample D Female 380.0
Hippocampal formation
nTPM: 456.1
Samples: 4

Max nTPM: 499.5
Min nTPM: 422.1
Sample A Male 499.5
Sample B Male 422.1
Sample C Female 446.5
Sample D Female 456.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
75198100 Antisense, RP_060502_01_F12, Mouse strain C57BL/6J (56 days, male) 0.3

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