MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.5 nTPM
HPA Brain:96.9 nTPM
GTEx:23.5 nTPM
FANTOM5:61.7 Scaled Tags Per Million
Pig:15.7 nTPM
Mouse:18.7 nTPM
Allen mouse:4.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 96.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.1
2586 Male, age 75, left hemisphere 92.5
2828 Female, age 72, unknown 78.4
1827 Male, age 72, unknown 74.1
1833 Male, age 53, unknown 73.8
2666 Male, age 74, left hemisphere 72.6
1870 Female, age 42, unknown 70.2
2411 Female, age 72, unknown 68.1
1830 Male, age 51, unknown 68.0
2219 Male, age 76, both hemispheres 66.9
2019 Male, age 18, unknown 56.4
Dorsal raphe nucleus
nTPM: 77.8
2047 Male, age 72, unknown 90.2
1828 Male, age 53, unknown 77.8
2016 Female, age 72, unknown 76.4
2750 Male, age 76, both hemispheres 72.5
2298 Female, age 72, unknown 71.9
Inferior colliculus
nTPM: 75.0
2849 Male, age 72, unknown 83.7
1848 Female, age 42, unknown 83.6
2097 Female, age 72, unknown 67.2
1890 Male, age 53, unknown 65.3
Median raphe nucleus
nTPM: 96.9
2220 Male, age 76, midline 96.9
Periaquaductal grey, anterior
nTPM: 71.3
1947 Male, age 18, unknown 81.1
1795 Male, age 51, unknown 74.7
2502 Female, age 75, unknown 58.2
Periaquaductal grey, dorsal
nTPM: 77.6
2850 Male, age 76, both hemispheres 90.7
1840 Male, age 53, unknown 82.1
2464 Female, age 72, unknown 73.3
1831 Male, age 72, unknown 64.5
Periaquaductal grey, lateral
nTPM: 81.5
2140 Male, age 76, both hemispheres 110.5
2053 Male, age 18, unknown 72.4
2272 Male, age 74, both hemispheres 61.7
Pretectal area
nTPM: 67.4
2825 Male, age 18, unknown 78.8
1944 Female, age 72, unknown 77.0
2667 Female, age 75, unknown 74.6
2224 Female, age 72, unknown 73.0
1817 Female, age 42, unknown 69.4
2316 Male, age 76, right hemisphere 67.8
1816 Male, age 51, unknown 66.5
1815 Male, age 53, unknown 64.0
2007 Male, age 72, unknown 60.5
2273 Male, age 74, both hemispheres 60.1
2407 Male, age 75, both hemispheres 49.8
Red nucleus
nTPM: 71.2
2725 Female, age 75, unknown 85.0
1954 Female, age 42, unknown 81.7
1821 Female, age 72, unknown 76.4
2823 Male, age 76, right hemisphere 74.8
2503 Female, age 72, unknown 73.9
2588 Male, age 74, left hemisphere 73.5
2769 Male, age 72, unknown 72.4
2227 Male, age 72, unknown 69.6
1865 Male, age 51, unknown 69.2
1904 Male, age 53, unknown 66.8
2785 Male, age 18, unknown 55.9
2584 Male, age 75, left hemisphere 54.8
Substantia nigra
nTPM: 82.4
1916 Female, age 42, unknown 102.5
2699 Male, age 18, unknown 91.6
2241 Male, age 72, unknown 88.4
1941 Male, age 53, unknown 86.7
1851 Male, age 51, unknown 86.2
2590 Female, age 75, unknown 82.8
2409 Female, age 72, unknown 79.5
1889 Female, age 72, unknown 73.6
2583 Male, age 75, right hemisphere 69.8
2665 Male, age 74, both hemispheres 62.9
Superior colliculus
nTPM: 63.3
1796 Male, age 53, unknown 73.4
1895 Male, age 76, right hemisphere 72.7
2261 Male, age 18, unknown 72.4
2087 Female, age 72, unknown 71.7
1839 Male, age 51, unknown 64.5
2664 Male, age 75, both hemispheres 59.0
2668 Female, age 75, unknown 56.0
1995 Male, age 72, unknown 55.9
1913 Female, age 42, unknown 55.0
2587 Male, age 74, left hemisphere 52.3
Ventral tegmental area
nTPM: 74.8
2218 Male, age 76, both hemispheres 83.5
1915 Female, age 42, unknown 81.3
2410 Female, age 72, unknown 79.3
1942 Male, age 51, unknown 70.3
2021 Male, age 53, unknown 68.6
2223 Female, age 72, unknown 66.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.5
Samples: 183

Max nTPM: 73.9
Min nTPM: 9.8
Std nTPM: 9.5
Median nTPM: 21.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 73.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 60.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 59.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 50.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 46.2
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 46.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 45.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 43.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 42.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 40.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 40.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 61.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.7
FF:10158-103A5 76 years, female 61.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 15.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.9
Samples: 4

Max nTPM: 16.5
Min nTPM: 11.4
Sample A Female 16.5
Sample B Female 12.2
Sample C Male 15.4
Sample D Male 11.4
Midbrain
nTPM: 14.7
Samples: 4

Max nTPM: 17.3
Min nTPM: 12.0
Sample A Female 12.1
Sample B Female 12.0
Sample C Male 17.3
Sample D Male 17.2
Periaqueductal gray
nTPM: 12.8
Samples: 3

Max nTPM: 14.3
Min nTPM: 10.6
Sample B Female 13.6
Sample C Male 14.3
Sample D Male 10.6
Superior colliculi
nTPM: 15.7
Samples: 4

Max nTPM: 20.4
Min nTPM: 12.0
Sample A Female 15.3
Sample B Female 12.0
Sample C Male 20.4
Sample D Male 15.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 18.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.7
Samples: 4

Max nTPM: 19.9
Min nTPM: 16.2
Sample A Male 16.2
Sample B Male 19.5
Sample C Female 19.1
Sample D Female 19.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
69838111 Antisense, RP_050224_02_C10, Mouse strain C57BL/6J (56 days, male) 6.2
74819460 Antisense, RP_060315_02_F03, Mouse strain C57BL/6J (56 days, male) 2.7

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