We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
LDHA
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • LDHA
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:115.7 nTPM
HPA Brain:73.7 nTPM
GTEx:115.7 nTPM
FANTOM5:507.1 Scaled Tags Per Million
Pig:29.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 57.6
1981 Female, age 72, midline 71.2
2565 Male, age 75, midline 64.1
2194 Female, age 79, both hemispheres 57.1
2048 Male, age 55, midline 54.8
2816 Male, age 47, midline 40.9
Cervical spinal cord, dorsal horn
nTPM: 73.7
2173 Female, age 72, unknown 98.2
2069 Male, age 47, both hemispheres 89.2
2296 Male, age 66, both hemispheres 73.4
2297 Male, age 75, both hemispheres 69.1
2721 Male, age 90, both hemispheres 62.3
1877 Male, age 55, unknown 50.2
Cervical spinal cord, ventral horn
nTPM: 66.9
2809 Male, age 90, both hemispheres 91.4
2480 Male, age 75, both hemispheres 88.6
2098 Female, age 72, unknown 67.0
2068 Male, age 55, unknown 58.3
2295 Male, age 66, both hemispheres 53.4
2820 Female, age 79, both hemispheres 42.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 115.7
Samples: 204

Max nTPM: 566.0
Min nTPM: 38.1
Std nTPM: 72.1
Median nTPM: 92.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 566.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 424.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 398.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 344.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 304.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 277.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 272.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 270.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 253.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 252.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 249.4
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 248.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 246.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 238.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 238.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 237.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 218.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 216.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 208.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 206.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 203.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 201.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 200.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 200.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 199.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 197.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 194.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 193.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 190.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 187.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 185.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 172.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 168.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 167.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 165.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 160.9
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 160.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 158.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 156.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 154.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 153.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 151.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 149.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 149.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 146.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 144.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 143.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 142.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 140.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 139.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 137.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 136.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 135.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 134.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 133.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 133.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 131.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 130.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 127.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 127.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 124.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 123.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 123.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 123.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 121.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 120.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 119.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 118.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 118.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 117.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 116.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 115.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 114.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 112.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 107.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 107.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 106.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 105.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 105.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 104.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 104.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 103.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 103.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 102.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 102.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 102.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 101.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 100.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 99.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 98.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 98.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 97.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 97.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 97.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 96.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 96.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 96.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 94.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 93.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 93.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 92.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 92.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 92.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 91.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 91.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 90.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 90.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 90.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 89.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 89.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 89.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 88.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 88.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 88.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 86.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 86.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 86.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 86.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 85.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 85.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 85.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 83.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 83.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 82.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 81.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 81.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 80.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 79.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 79.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 78.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 78.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 78.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 77.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 77.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 76.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 76.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 75.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 75.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 73.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 73.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 73.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 73.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 73.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 72.6
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 72.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 72.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 72.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 71.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 71.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 70.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 68.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 68.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 68.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 68.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 67.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 67.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 67.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 67.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 66.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 66.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 66.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 65.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 63.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 63.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 63.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 62.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 62.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 62.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 61.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 61.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 61.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 61.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 61.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 60.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 60.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 59.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 58.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 57.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 57.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 57.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 57.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 57.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 56.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 56.1
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 55.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 55.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 55.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 55.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 55.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 55.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 54.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 54.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 53.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 53.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 52.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 52.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 51.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 50.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 48.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 47.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 47.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 46.2
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 45.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 38.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

507.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 507.1
FF:10159-103A6 76 years, female 638.7
FF:10181-103D1 60 years, female 375.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 29.8
Samples: 4

Max nTPM: 53.4
Min nTPM: 11.7
Sample A Female 11.7
Sample B Female 29.3
Sample C Male 53.4
Sample D Male 24.8
Ventral spinal cord
nTPM: 21.3
Samples: 4

Max nTPM: 30.1
Min nTPM: 10.7
Sample A Female 10.7
Sample B Female 19.4
Sample C Male 30.1
Sample D Male 25.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo