MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:336.1 nTPM
HPA Brain:303.5 nTPM
GTEx:336.1 nTPM
FANTOM5:321.9 Scaled Tags Per Million
Pig:97.5 nTPM
Mouse:1078.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 303.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 212.8
2666 Male, age 74, left hemisphere 250.3
1827 Male, age 72, unknown 234.0
2586 Male, age 75, left hemisphere 226.9
2828 Female, age 72, unknown 226.4
2219 Male, age 76, both hemispheres 219.9
1870 Female, age 42, unknown 212.2
2411 Female, age 72, unknown 210.2
1833 Male, age 53, unknown 189.7
1830 Male, age 51, unknown 179.5
2019 Male, age 18, unknown 179.3
Dorsal raphe nucleus
nTPM: 211.7
2750 Male, age 76, both hemispheres 242.8
2047 Male, age 72, unknown 228.8
2298 Female, age 72, unknown 226.6
1828 Male, age 53, unknown 207.7
2016 Female, age 72, unknown 152.7
Inferior colliculus
nTPM: 177.5
2849 Male, age 72, unknown 195.5
1890 Male, age 53, unknown 176.7
2097 Female, age 72, unknown 172.9
1848 Female, age 42, unknown 164.9
Median raphe nucleus
nTPM: 303.5
2220 Male, age 76, midline 303.5
Periaquaductal grey, anterior
nTPM: 224.9
1795 Male, age 51, unknown 245.7
1947 Male, age 18, unknown 238.5
2502 Female, age 75, unknown 190.6
Periaquaductal grey, dorsal
nTPM: 184.5
2850 Male, age 76, both hemispheres 203.3
1840 Male, age 53, unknown 183.0
1831 Male, age 72, unknown 182.5
2464 Female, age 72, unknown 169.1
Periaquaductal grey, lateral
nTPM: 158.7
2140 Male, age 76, both hemispheres 165.1
2053 Male, age 18, unknown 155.5
2272 Male, age 74, both hemispheres 155.5
Pretectal area
nTPM: 223.5
2007 Male, age 72, unknown 275.2
1816 Male, age 51, unknown 272.7
1817 Female, age 42, unknown 271.1
1944 Female, age 72, unknown 267.8
1815 Male, age 53, unknown 246.2
2667 Female, age 75, unknown 236.5
2224 Female, age 72, unknown 213.7
2825 Male, age 18, unknown 201.6
2407 Male, age 75, both hemispheres 175.7
2273 Male, age 74, both hemispheres 155.5
2316 Male, age 76, right hemisphere 142.8
Red nucleus
nTPM: 189.4
2785 Male, age 18, unknown 218.1
2588 Male, age 74, left hemisphere 212.0
2725 Female, age 75, unknown 211.4
1821 Female, age 72, unknown 196.5
2584 Male, age 75, left hemisphere 194.4
2769 Male, age 72, unknown 189.2
2503 Female, age 72, unknown 183.4
2823 Male, age 76, right hemisphere 183.1
2227 Male, age 72, unknown 181.4
1865 Male, age 51, unknown 168.4
1954 Female, age 42, unknown 168.4
1904 Male, age 53, unknown 167.1
Substantia nigra
nTPM: 249.9
1916 Female, age 42, unknown 349.6
2665 Male, age 74, both hemispheres 294.0
1941 Male, age 53, unknown 283.3
1851 Male, age 51, unknown 274.0
1889 Female, age 72, unknown 253.9
2699 Male, age 18, unknown 246.9
2583 Male, age 75, right hemisphere 222.2
2590 Female, age 75, unknown 210.8
2241 Male, age 72, unknown 191.3
2409 Female, age 72, unknown 173.1
Superior colliculus
nTPM: 195.8
1796 Male, age 53, unknown 229.4
2087 Female, age 72, unknown 221.5
2668 Female, age 75, unknown 218.1
2261 Male, age 18, unknown 203.5
2587 Male, age 74, left hemisphere 203.2
2664 Male, age 75, both hemispheres 201.1
1839 Male, age 51, unknown 184.9
1913 Female, age 42, unknown 181.9
1895 Male, age 76, right hemisphere 159.9
1995 Male, age 72, unknown 154.5
Ventral tegmental area
nTPM: 244.0
2218 Male, age 76, both hemispheres 305.7
1915 Female, age 42, unknown 272.3
2410 Female, age 72, unknown 241.5
2223 Female, age 72, unknown 225.8
1942 Male, age 51, unknown 218.2
2021 Male, age 53, unknown 200.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 336.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 336.1
Samples: 183

Max nTPM: 631.5
Min nTPM: 157.7
Std nTPM: 89.6
Median nTPM: 322.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 631.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 622.5
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 591.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 583.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 564.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 555.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 550.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 524.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 522.1
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 521.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 487.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 321.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 321.9
FF:10158-103A5 76 years, female 321.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 97.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 93.4
Samples: 4

Max nTPM: 117.0
Min nTPM: 66.2
Sample A Female 117.0
Sample B Female 83.4
Sample C Male 107.1
Sample D Male 66.2
Midbrain
nTPM: 97.5
Samples: 4

Max nTPM: 114.6
Min nTPM: 86.8
Sample A Female 91.2
Sample B Female 86.8
Sample C Male 114.6
Sample D Male 97.4
Periaqueductal gray
nTPM: 80.3
Samples: 3

Max nTPM: 88.7
Min nTPM: 74.9
Sample B Female 74.9
Sample C Male 88.7
Sample D Male 77.2
Superior colliculi
nTPM: 97.0
Samples: 4

Max nTPM: 115.6
Min nTPM: 89.1
Sample A Female 115.6
Sample B Female 93.0
Sample C Male 90.2
Sample D Male 89.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1078.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 1078.9
Samples: 4

Max nTPM: 1187.1
Min nTPM: 995.9
Sample A Male 1049.5
Sample B Male 995.9
Sample C Female 1083.2
Sample D Female 1187.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo