MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.2 nTPM
HPA Brain:86.6 nTPM
GTEx:19.2 nTPM
FANTOM5:45.2 Scaled Tags Per Million
Pig:27.0 nTPM
Mouse:41.3 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 86.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.5
2666 Male, age 74, left hemisphere 102.4
2411 Female, age 72, unknown 96.9
1830 Male, age 51, unknown 87.5
1870 Female, age 42, unknown 84.1
1833 Male, age 53, unknown 78.6
2019 Male, age 18, unknown 77.1
2586 Male, age 75, left hemisphere 75.3
1827 Male, age 72, unknown 73.4
2828 Female, age 72, unknown 71.7
2219 Male, age 76, both hemispheres 67.5
Dorsal raphe nucleus
nTPM: 65.2
2750 Male, age 76, both hemispheres 84.9
2016 Female, age 72, unknown 65.1
2047 Male, age 72, unknown 63.2
1828 Male, age 53, unknown 62.6
2298 Female, age 72, unknown 50.3
Inferior colliculus
nTPM: 59.7
1890 Male, age 53, unknown 61.8
1848 Female, age 42, unknown 61.1
2849 Male, age 72, unknown 59.2
2097 Female, age 72, unknown 56.9
Median raphe nucleus
nTPM: 57.3
2220 Male, age 76, midline 57.3
Periaquaductal grey, anterior
nTPM: 67.9
2502 Female, age 75, unknown 83.5
1947 Male, age 18, unknown 67.6
1795 Male, age 51, unknown 52.6
Periaquaductal grey, dorsal
nTPM: 53.8
2464 Female, age 72, unknown 68.4
1831 Male, age 72, unknown 54.8
1840 Male, age 53, unknown 52.9
2850 Male, age 76, both hemispheres 39.2
Periaquaductal grey, lateral
nTPM: 48.7
2053 Male, age 18, unknown 63.0
2272 Male, age 74, both hemispheres 46.3
2140 Male, age 76, both hemispheres 36.8
Pretectal area
nTPM: 62.0
1815 Male, age 53, unknown 77.4
2007 Male, age 72, unknown 75.3
2407 Male, age 75, both hemispheres 70.9
1817 Female, age 42, unknown 66.0
1816 Male, age 51, unknown 64.0
2316 Male, age 76, right hemisphere 64.0
1944 Female, age 72, unknown 63.1
2825 Male, age 18, unknown 60.3
2224 Female, age 72, unknown 52.3
2667 Female, age 75, unknown 46.6
2273 Male, age 74, both hemispheres 41.7
Red nucleus
nTPM: 86.6
2588 Male, age 74, left hemisphere 110.3
2503 Female, age 72, unknown 104.7
1865 Male, age 51, unknown 100.8
1821 Female, age 72, unknown 92.7
2584 Male, age 75, left hemisphere 88.1
1904 Male, age 53, unknown 84.3
2725 Female, age 75, unknown 82.9
2785 Male, age 18, unknown 79.1
2823 Male, age 76, right hemisphere 75.4
1954 Female, age 42, unknown 74.5
2769 Male, age 72, unknown 73.7
2227 Male, age 72, unknown 72.1
Substantia nigra
nTPM: 80.7
2409 Female, age 72, unknown 93.7
2241 Male, age 72, unknown 89.3
1851 Male, age 51, unknown 85.6
1941 Male, age 53, unknown 84.0
2590 Female, age 75, unknown 78.3
1889 Female, age 72, unknown 76.9
2665 Male, age 74, both hemispheres 76.9
2699 Male, age 18, unknown 75.3
1916 Female, age 42, unknown 74.7
2583 Male, age 75, right hemisphere 72.4
Superior colliculus
nTPM: 75.4
2587 Male, age 74, left hemisphere 91.9
1913 Female, age 42, unknown 91.6
2668 Female, age 75, unknown 82.7
1995 Male, age 72, unknown 82.1
1839 Male, age 51, unknown 74.2
1895 Male, age 76, right hemisphere 74.0
2261 Male, age 18, unknown 68.4
1796 Male, age 53, unknown 65.1
2664 Male, age 75, both hemispheres 64.0
2087 Female, age 72, unknown 60.2
Ventral tegmental area
nTPM: 70.8
2410 Female, age 72, unknown 92.2
2223 Female, age 72, unknown 72.8
1915 Female, age 42, unknown 69.5
2218 Male, age 76, both hemispheres 64.7
2021 Male, age 53, unknown 62.9
1942 Male, age 51, unknown 62.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 19.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.2
Samples: 183

Max nTPM: 46.9
Min nTPM: 6.4
Std nTPM: 6.4
Median nTPM: 18.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 46.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 39.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 35.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 33.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 33.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 33.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 32.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 32.5
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 32.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 32.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 31.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 45.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.2
FF:10158-103A5 76 years, female 45.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 27.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.7
Samples: 4

Max nTPM: 34.3
Min nTPM: 11.7
Sample A Female 34.3
Sample B Female 17.7
Sample C Male 31.1
Sample D Male 11.7
Midbrain
nTPM: 26.0
Samples: 4

Max nTPM: 34.7
Min nTPM: 13.8
Sample A Female 13.8
Sample B Female 22.6
Sample C Male 34.7
Sample D Male 32.8
Periaqueductal gray
nTPM: 19.7
Samples: 3

Max nTPM: 24.4
Min nTPM: 17.3
Sample B Female 17.3
Sample C Male 24.4
Sample D Male 17.3
Superior colliculi
nTPM: 27.0
Samples: 4

Max nTPM: 35.4
Min nTPM: 14.0
Sample A Female 31.8
Sample B Female 14.0
Sample C Male 35.4
Sample D Male 26.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 41.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.3
Samples: 4

Max nTPM: 42.6
Min nTPM: 39.6
Sample A Male 39.6
Sample B Male 40.5
Sample C Female 42.6
Sample D Female 42.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69524461 Antisense, RP_050419_04_D07, Mouse strain C57BL/6J (56 days, male) 0.2

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