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  • PSAT1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:100.4 nTPM
HPA Brain:112.6 nTPM
GTEx:100.4 nTPM
FANTOM5:236.9 Scaled Tags Per Million
Pig:253.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 99.9
1981 Female, age 72, midline 141.1
2048 Male, age 55, midline 123.8
2565 Male, age 75, midline 81.7
2816 Male, age 47, midline 80.5
2194 Female, age 79, both hemispheres 72.4
Cervical spinal cord, dorsal horn
nTPM: 112.6
2296 Male, age 66, both hemispheres 156.2
2173 Female, age 72, unknown 145.5
2069 Male, age 47, both hemispheres 122.8
1877 Male, age 55, unknown 95.6
2721 Male, age 90, both hemispheres 85.0
2297 Male, age 75, both hemispheres 70.4
Cervical spinal cord, ventral horn
nTPM: 88.2
2098 Female, age 72, unknown 166.7
2809 Male, age 90, both hemispheres 90.4
2068 Male, age 55, unknown 81.0
2295 Male, age 66, both hemispheres 70.3
2480 Male, age 75, both hemispheres 63.4
2820 Female, age 79, both hemispheres 57.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 100.4
Samples: 204

Max nTPM: 167.5
Min nTPM: 31.7
Std nTPM: 25.1
Median nTPM: 100.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 167.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 164.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 160.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 159.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 158.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 157.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 157.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 152.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 151.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 148.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 148.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 140.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 136.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 134.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 133.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 133.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 132.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 132.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 131.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 130.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 130.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 129.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 129.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 128.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 127.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 126.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 125.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 125.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 125.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 125.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 124.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 124.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 124.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 123.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 122.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 122.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 122.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 121.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 120.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 119.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 119.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 118.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 118.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 118.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 118.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 118.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 118.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 118.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 118.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 117.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 117.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 117.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 117.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 117.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 117.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 116.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 116.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 116.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 116.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 115.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 115.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 115.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 115.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 114.4
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 113.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 113.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 113.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 113.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 111.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 110.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 109.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 109.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 108.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 108.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 107.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 107.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 107.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 107.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 106.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 106.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 106.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 106.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 106.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 106.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 105.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 105.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 105.0
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 104.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 104.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 104.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 103.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 103.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 103.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 103.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 102.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 102.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 102.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 101.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 101.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 100.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 100.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 100.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 99.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 99.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 99.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 99.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 99.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 99.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 98.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 98.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 97.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 97.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 96.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 96.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 96.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 96.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 96.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 95.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 95.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 95.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 95.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 94.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 94.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 94.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 93.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 93.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 92.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 91.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 91.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 91.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 91.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 90.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 90.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 89.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 89.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 89.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 89.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 88.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 88.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 87.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 87.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 87.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 87.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 87.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 86.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 85.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 85.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 85.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 84.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 84.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 83.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 83.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 83.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 82.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 82.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 82.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 82.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 81.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 81.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 80.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 80.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 80.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 80.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 79.9
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 79.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 79.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 79.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 78.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 77.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 77.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 76.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 76.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 76.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 74.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 74.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 73.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 73.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 71.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 70.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 70.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 68.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 67.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 67.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 65.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 65.3
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 65.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 65.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 64.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 64.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 64.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 64.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 63.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 61.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 60.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 58.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 58.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 55.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 55.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 55.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 53.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 45.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 42.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 40.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 31.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

236.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 236.9
FF:10181-103D1 60 years, female 294.3
FF:10159-103A6 76 years, female 179.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

253.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 202.6
Samples: 4

Max nTPM: 242.4
Min nTPM: 182.1
Sample A Female 185.6
Sample B Female 242.4
Sample C Male 200.2
Sample D Male 182.1
Ventral spinal cord
nTPM: 253.1
Samples: 4

Max nTPM: 272.6
Min nTPM: 238.4
Sample A Female 248.8
Sample B Female 272.6
Sample C Male 238.4
Sample D Male 252.5

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