MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.9 nTPM
HPA Brain:22.3 nTPM
GTEx:10.9 nTPM
FANTOM5:75.1 Scaled Tags Per Million
Pig:4.7 nTPM
Mouse:2.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 22.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.6
1833 Male, age 53, unknown 19.4
2019 Male, age 18, unknown 19.1
1830 Male, age 51, unknown 19.0
2666 Male, age 74, left hemisphere 18.8
2828 Female, age 72, unknown 17.0
2411 Female, age 72, unknown 16.6
1870 Female, age 42, unknown 15.6
1827 Male, age 72, unknown 15.5
2586 Male, age 75, left hemisphere 13.3
2219 Male, age 76, both hemispheres 11.9
Dorsal raphe nucleus
nTPM: 17.6
2016 Female, age 72, unknown 20.9
2298 Female, age 72, unknown 18.3
2750 Male, age 76, both hemispheres 17.6
1828 Male, age 53, unknown 16.7
2047 Male, age 72, unknown 14.4
Inferior colliculus
nTPM: 15.4
1848 Female, age 42, unknown 16.8
2097 Female, age 72, unknown 15.6
1890 Male, age 53, unknown 14.7
2849 Male, age 72, unknown 14.5
Median raphe nucleus
nTPM: 17.4
2220 Male, age 76, midline 17.4
Periaquaductal grey, anterior
nTPM: 13.9
1947 Male, age 18, unknown 15.3
1795 Male, age 51, unknown 14.7
2502 Female, age 75, unknown 11.7
Periaquaductal grey, dorsal
nTPM: 18.6
1831 Male, age 72, unknown 23.6
2850 Male, age 76, both hemispheres 18.1
2464 Female, age 72, unknown 17.0
1840 Male, age 53, unknown 15.9
Periaquaductal grey, lateral
nTPM: 20.1
2272 Male, age 74, both hemispheres 22.0
2140 Male, age 76, both hemispheres 20.7
2053 Male, age 18, unknown 17.6
Pretectal area
nTPM: 16.3
2316 Male, age 76, right hemisphere 22.5
2407 Male, age 75, both hemispheres 21.7
2273 Male, age 74, both hemispheres 20.4
2224 Female, age 72, unknown 15.9
1815 Male, age 53, unknown 15.8
1944 Female, age 72, unknown 15.7
2007 Male, age 72, unknown 15.2
2825 Male, age 18, unknown 14.9
1817 Female, age 42, unknown 13.6
1816 Male, age 51, unknown 11.9
2667 Female, age 75, unknown 11.9
Red nucleus
nTPM: 17.2
1865 Male, age 51, unknown 21.4
1904 Male, age 53, unknown 20.2
2503 Female, age 72, unknown 19.2
2725 Female, age 75, unknown 18.4
2584 Male, age 75, left hemisphere 18.2
2823 Male, age 76, right hemisphere 17.9
1954 Female, age 42, unknown 17.4
2227 Male, age 72, unknown 17.0
2769 Male, age 72, unknown 15.8
2785 Male, age 18, unknown 15.5
1821 Female, age 72, unknown 15.1
2588 Male, age 74, left hemisphere 10.0
Substantia nigra
nTPM: 22.3
2590 Female, age 75, unknown 40.1
2665 Male, age 74, both hemispheres 24.2
2583 Male, age 75, right hemisphere 24.1
2699 Male, age 18, unknown 23.6
2409 Female, age 72, unknown 23.2
2241 Male, age 72, unknown 19.8
1941 Male, age 53, unknown 18.8
1851 Male, age 51, unknown 18.2
1916 Female, age 42, unknown 17.4
1889 Female, age 72, unknown 13.9
Superior colliculus
nTPM: 17.4
1913 Female, age 42, unknown 23.0
1995 Male, age 72, unknown 22.0
2587 Male, age 74, left hemisphere 19.4
2664 Male, age 75, both hemispheres 18.8
2087 Female, age 72, unknown 18.3
1839 Male, age 51, unknown 17.0
2261 Male, age 18, unknown 16.2
1796 Male, age 53, unknown 14.1
2668 Female, age 75, unknown 13.0
1895 Male, age 76, right hemisphere 12.3
Ventral tegmental area
nTPM: 20.2
2021 Male, age 53, unknown 25.1
2218 Male, age 76, both hemispheres 20.8
1942 Male, age 51, unknown 20.5
2410 Female, age 72, unknown 20.5
1915 Female, age 42, unknown 17.9
2223 Female, age 72, unknown 16.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.9
Samples: 183

Max nTPM: 65.5
Min nTPM: 1.6
Std nTPM: 8.9
Median nTPM: 9.0
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 65.5
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 61.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 39.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 38.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 37.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 33.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 30.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 28.6
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 27.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 26.7
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 26.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 75.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.1
FF:10158-103A5 76 years, female 75.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 4.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.2
Samples: 4

Max nTPM: 5.5
Min nTPM: 2.1
Sample A Female 2.1
Sample B Female 5.5
Sample C Male 2.2
Sample D Male 3.0
Midbrain
nTPM: 3.8
Samples: 4

Max nTPM: 7.6
Min nTPM: 2.0
Sample A Female 2.0
Sample B Female 7.6
Sample C Male 2.5
Sample D Male 3.1
Periaqueductal gray
nTPM: 4.7
Samples: 3

Max nTPM: 6.8
Min nTPM: 3.3
Sample B Female 6.8
Sample C Male 3.3
Sample D Male 4.0
Superior colliculi
nTPM: 2.7
Samples: 4

Max nTPM: 3.2
Min nTPM: 2.4
Sample A Female 2.5
Sample B Female 3.2
Sample C Male 2.4
Sample D Male 2.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.1
Samples: 4

Max nTPM: 2.2
Min nTPM: 2.0
Sample A Male 2.0
Sample B Male 2.2
Sample C Female 2.1
Sample D Female 2.1

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