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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
234.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 212.1
2666
Male, age 74, left hemisphere
251.1
1870
Female, age 42, unknown
232.9
2411
Female, age 72, unknown
228.0
1830
Male, age 51, unknown
214.0
1833
Male, age 53, unknown
214.0
2586
Male, age 75, left hemisphere
211.4
2219
Male, age 76, both hemispheres
199.1
1827
Male, age 72, unknown
192.0
2828
Female, age 72, unknown
190.5
2019
Male, age 18, unknown
188.1
Dorsal raphe nucleus nTPM: 187.7
2016
Female, age 72, unknown
209.9
2750
Male, age 76, both hemispheres
194.4
1828
Male, age 53, unknown
187.8
2047
Male, age 72, unknown
185.8
2298
Female, age 72, unknown
160.7
Inferior colliculus nTPM: 206.8
1890
Male, age 53, unknown
223.5
2849
Male, age 72, unknown
216.7
1848
Female, age 42, unknown
214.0
2097
Female, age 72, unknown
173.1
Median raphe nucleus nTPM: 209.2
2220
Male, age 76, midline
209.2
Periaquaductal grey, anterior nTPM: 202.2
2502
Female, age 75, unknown
215.4
1947
Male, age 18, unknown
210.4
1795
Male, age 51, unknown
180.9
Periaquaductal grey, dorsal nTPM: 205.3
2850
Male, age 76, both hemispheres
226.5
1840
Male, age 53, unknown
208.6
1831
Male, age 72, unknown
193.3
2464
Female, age 72, unknown
193.0
Periaquaductal grey, lateral nTPM: 189.9
2053
Male, age 18, unknown
215.7
2140
Male, age 76, both hemispheres
207.9
2272
Male, age 74, both hemispheres
146.0
Pretectal area nTPM: 186.3
2825
Male, age 18, unknown
214.6
1815
Male, age 53, unknown
212.1
2407
Male, age 75, both hemispheres
204.1
2316
Male, age 76, right hemisphere
194.0
1817
Female, age 42, unknown
188.8
2224
Female, age 72, unknown
185.7
2007
Male, age 72, unknown
182.4
1944
Female, age 72, unknown
174.2
1816
Male, age 51, unknown
170.8
2667
Female, age 75, unknown
168.4
2273
Male, age 74, both hemispheres
154.0
Red nucleus nTPM: 234.2
2503
Female, age 72, unknown
289.9
1865
Male, age 51, unknown
269.3
2588
Male, age 74, left hemisphere
267.3
2584
Male, age 75, left hemisphere
245.9
1904
Male, age 53, unknown
232.5
2725
Female, age 75, unknown
229.7
2769
Male, age 72, unknown
219.7
2227
Male, age 72, unknown
217.5
1821
Female, age 72, unknown
215.9
1954
Female, age 42, unknown
215.1
2823
Male, age 76, right hemisphere
213.1
2785
Male, age 18, unknown
194.8
Substantia nigra nTPM: 222.0
2590
Female, age 75, unknown
249.5
2409
Female, age 72, unknown
248.5
2699
Male, age 18, unknown
244.7
2241
Male, age 72, unknown
239.5
2665
Male, age 74, both hemispheres
235.4
1851
Male, age 51, unknown
217.8
2583
Male, age 75, right hemisphere
215.8
1889
Female, age 72, unknown
210.3
1941
Male, age 53, unknown
188.0
1916
Female, age 42, unknown
170.0
Superior colliculus nTPM: 204.6
1913
Female, age 42, unknown
245.1
2587
Male, age 74, left hemisphere
244.0
1995
Male, age 72, unknown
239.9
1839
Male, age 51, unknown
210.0
1895
Male, age 76, right hemisphere
198.9
2668
Female, age 75, unknown
187.0
1796
Male, age 53, unknown
186.8
2664
Male, age 75, both hemispheres
184.5
2261
Male, age 18, unknown
176.0
2087
Female, age 72, unknown
173.6
Ventral tegmental area nTPM: 209.2
2223
Female, age 72, unknown
224.1
2410
Female, age 72, unknown
216.1
1942
Male, age 51, unknown
210.8
2021
Male, age 53, unknown
206.9
1915
Female, age 42, unknown
205.9
2218
Male, age 76, both hemispheres
191.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
448.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 448.1
Samples: 183
Max nTPM: 1078.0
Min nTPM: 164.0
Std nTPM: 150.7
Median nTPM: 416.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1078.0
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
984.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
857.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
799.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
763.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
761.7
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
754.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
747.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
738.7
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
713.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
710.5
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
708.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
705.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
701.6
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
698.9
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
692.8
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
687.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
657.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
646.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
643.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
642.0
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
637.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
615.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
613.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
611.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
598.8
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
596.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
593.3
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
592.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
576.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
571.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
570.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
565.1
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
564.9
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
562.2
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
558.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
554.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
550.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
548.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
548.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
547.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
546.8
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
543.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
541.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
541.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
539.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
538.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
537.9
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
536.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
535.6
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
535.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
530.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
529.9
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
529.4
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
519.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
517.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
512.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
504.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
504.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
501.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
498.3
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
496.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
493.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
492.4
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
491.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
490.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
486.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
481.6
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
479.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
479.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
478.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
473.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
470.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
467.4
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
466.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
464.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
461.5
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
458.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
454.0
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
452.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
451.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
450.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
445.2
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
441.8
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
441.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
437.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
435.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
430.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
427.3
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
422.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
418.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
416.3
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
413.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
411.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
408.6
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
408.1
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
405.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
399.8
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
399.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
397.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
396.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
396.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
395.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
391.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
390.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
390.0
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
389.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
388.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
385.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
382.8
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
378.8
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
374.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
369.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
369.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
368.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
368.1
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
367.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
364.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
363.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
362.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
360.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
356.7
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
353.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
352.7
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
347.5
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
347.4
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
344.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
344.1
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
343.7
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
342.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
341.0
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
339.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
339.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
337.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
334.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
334.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
331.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
330.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
329.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
328.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
327.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
327.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
325.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
324.5
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
320.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
319.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
314.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
314.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
314.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
312.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
311.1
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
310.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
309.5
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
309.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
308.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
308.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
305.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
298.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
296.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
293.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
292.0
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
288.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
287.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
283.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
283.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
283.2
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
283.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
280.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
279.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
278.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
275.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
273.7
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
271.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
269.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
261.2
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
256.3
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
254.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
243.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
242.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
227.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
218.1
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
201.9
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
164.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
226.3
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 200.0
Samples: 4
Max nTPM: 214.9
Min nTPM: 190.2
Sample A
Female
214.9
Sample B
Female
190.2
Sample C
Male
199.6
Sample D
Male
195.1
Midbrain nTPM: 226.3
Samples: 4
Max nTPM: 290.3
Min nTPM: 193.0
Sample A
Female
290.3
Sample B
Female
222.8
Sample C
Male
199.0
Sample D
Male
193.0
Periaqueductal gray nTPM: 201.5
Samples: 3
Max nTPM: 217.6
Min nTPM: 177.2
Sample B
Female
209.7
Sample C
Male
217.6
Sample D
Male
177.2
Superior colliculi nTPM: 221.1
Samples: 4
Max nTPM: 233.8
Min nTPM: 212.0
Sample A
Female
233.8
Sample B
Female
220.9
Sample C
Male
212.0
Sample D
Male
217.7
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
219.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 219.5
Samples: 4
Max nTPM: 228.3
Min nTPM: 209.6
Sample A
Male
224.8
Sample B
Male
215.4
Sample C
Female
228.3
Sample D
Female
209.6
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.