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HNRNPA1
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  • HNRNPA1
BRAIN MIDBRAIN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Midbrain
Brain methods
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:448.1 nTPM
HPA Brain:234.2 nTPM
GTEx:448.1 nTPM
FANTOM5:10.8 Scaled Tags Per Million
Pig:226.3 nTPM
Mouse:219.5 nTPM
Allen mouse:16.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

234.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 212.1
2666 Male, age 74, left hemisphere 251.1
1870 Female, age 42, unknown 232.9
2411 Female, age 72, unknown 228.0
1830 Male, age 51, unknown 214.0
1833 Male, age 53, unknown 214.0
2586 Male, age 75, left hemisphere 211.4
2219 Male, age 76, both hemispheres 199.1
1827 Male, age 72, unknown 192.0
2828 Female, age 72, unknown 190.5
2019 Male, age 18, unknown 188.1
Dorsal raphe nucleus
nTPM: 187.7
2016 Female, age 72, unknown 209.9
2750 Male, age 76, both hemispheres 194.4
1828 Male, age 53, unknown 187.8
2047 Male, age 72, unknown 185.8
2298 Female, age 72, unknown 160.7
Inferior colliculus
nTPM: 206.8
1890 Male, age 53, unknown 223.5
2849 Male, age 72, unknown 216.7
1848 Female, age 42, unknown 214.0
2097 Female, age 72, unknown 173.1
Median raphe nucleus
nTPM: 209.2
2220 Male, age 76, midline 209.2
Periaquaductal grey, anterior
nTPM: 202.2
2502 Female, age 75, unknown 215.4
1947 Male, age 18, unknown 210.4
1795 Male, age 51, unknown 180.9
Periaquaductal grey, dorsal
nTPM: 205.3
2850 Male, age 76, both hemispheres 226.5
1840 Male, age 53, unknown 208.6
1831 Male, age 72, unknown 193.3
2464 Female, age 72, unknown 193.0
Periaquaductal grey, lateral
nTPM: 189.9
2053 Male, age 18, unknown 215.7
2140 Male, age 76, both hemispheres 207.9
2272 Male, age 74, both hemispheres 146.0
Pretectal area
nTPM: 186.3
2825 Male, age 18, unknown 214.6
1815 Male, age 53, unknown 212.1
2407 Male, age 75, both hemispheres 204.1
2316 Male, age 76, right hemisphere 194.0
1817 Female, age 42, unknown 188.8
2224 Female, age 72, unknown 185.7
2007 Male, age 72, unknown 182.4
1944 Female, age 72, unknown 174.2
1816 Male, age 51, unknown 170.8
2667 Female, age 75, unknown 168.4
2273 Male, age 74, both hemispheres 154.0
Red nucleus
nTPM: 234.2
2503 Female, age 72, unknown 289.9
1865 Male, age 51, unknown 269.3
2588 Male, age 74, left hemisphere 267.3
2584 Male, age 75, left hemisphere 245.9
1904 Male, age 53, unknown 232.5
2725 Female, age 75, unknown 229.7
2769 Male, age 72, unknown 219.7
2227 Male, age 72, unknown 217.5
1821 Female, age 72, unknown 215.9
1954 Female, age 42, unknown 215.1
2823 Male, age 76, right hemisphere 213.1
2785 Male, age 18, unknown 194.8
Substantia nigra
nTPM: 222.0
2590 Female, age 75, unknown 249.5
2409 Female, age 72, unknown 248.5
2699 Male, age 18, unknown 244.7
2241 Male, age 72, unknown 239.5
2665 Male, age 74, both hemispheres 235.4
1851 Male, age 51, unknown 217.8
2583 Male, age 75, right hemisphere 215.8
1889 Female, age 72, unknown 210.3
1941 Male, age 53, unknown 188.0
1916 Female, age 42, unknown 170.0
Superior colliculus
nTPM: 204.6
1913 Female, age 42, unknown 245.1
2587 Male, age 74, left hemisphere 244.0
1995 Male, age 72, unknown 239.9
1839 Male, age 51, unknown 210.0
1895 Male, age 76, right hemisphere 198.9
2668 Female, age 75, unknown 187.0
1796 Male, age 53, unknown 186.8
2664 Male, age 75, both hemispheres 184.5
2261 Male, age 18, unknown 176.0
2087 Female, age 72, unknown 173.6
Ventral tegmental area
nTPM: 209.2
2223 Female, age 72, unknown 224.1
2410 Female, age 72, unknown 216.1
1942 Male, age 51, unknown 210.8
2021 Male, age 53, unknown 206.9
1915 Female, age 42, unknown 205.9
2218 Male, age 76, both hemispheres 191.5

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

448.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 448.1
Samples: 183

Max nTPM: 1078.0
Min nTPM: 164.0
Std nTPM: 150.7
Median nTPM: 416.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 1078.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 984.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 857.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 799.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 763.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 761.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 754.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 747.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 738.7
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 713.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 710.5
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 708.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 705.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 701.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 698.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 692.8
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 687.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 657.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 646.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 643.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 642.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 637.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 615.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 613.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 611.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 598.8
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 596.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 593.3
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 592.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 576.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 571.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 570.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 565.1
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 564.9
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 562.2
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 558.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 554.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 550.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 548.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 548.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 547.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 546.8
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 543.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 541.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 541.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 539.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 538.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 537.9
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 536.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 535.6
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 535.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 530.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 529.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 529.4
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 519.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 517.2
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 512.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 504.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 504.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 501.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 498.3
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 496.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 493.7
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 492.4
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 491.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 490.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 486.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 481.6
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 479.1
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 479.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 478.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 473.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 470.4
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 467.4
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 466.0
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 464.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 461.5
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 458.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 454.0
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 452.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 451.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 450.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 445.2
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 441.8
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 441.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 437.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 435.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 430.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 427.3
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 422.6
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 418.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 416.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 413.2
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 411.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 408.6
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 408.1
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 405.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 399.8
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 399.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 397.3
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 396.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 396.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 395.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 391.0
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 390.8
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 390.0
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 389.6
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 388.8
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 385.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 382.8
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 378.8
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 374.4
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 369.9
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 369.8
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 368.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 368.1
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 367.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 364.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 363.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 362.4
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 360.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 356.7
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 353.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 352.7
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 347.5
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 347.4
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 344.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 344.1
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 343.7
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 342.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 341.0
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 339.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 339.3
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 337.8
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 334.5
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 334.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 331.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 330.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 329.4
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 328.4
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 327.5
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 327.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 325.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 324.5
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 320.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 319.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 314.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 314.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 314.5
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 312.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 311.1
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 310.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 309.5
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 309.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 308.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 308.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 305.1
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 298.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 296.1
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 293.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 292.0
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 288.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 287.9
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 283.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 283.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 283.2
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 283.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 280.4
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 279.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 278.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 275.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 273.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 271.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 269.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 261.2
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 256.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 254.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 243.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 242.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 227.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 218.1
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 201.9
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 164.0
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MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

10.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.8
FF:10158-103A5 76 years, female 10.8

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

226.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 200.0
Samples: 4

Max nTPM: 214.9
Min nTPM: 190.2
Sample A Female 214.9
Sample B Female 190.2
Sample C Male 199.6
Sample D Male 195.1
Midbrain
nTPM: 226.3
Samples: 4

Max nTPM: 290.3
Min nTPM: 193.0
Sample A Female 290.3
Sample B Female 222.8
Sample C Male 199.0
Sample D Male 193.0
Periaqueductal gray
nTPM: 201.5
Samples: 3

Max nTPM: 217.6
Min nTPM: 177.2
Sample B Female 209.7
Sample C Male 217.6
Sample D Male 177.2
Superior colliculi
nTPM: 221.1
Samples: 4

Max nTPM: 233.8
Min nTPM: 212.0
Sample A Female 233.8
Sample B Female 220.9
Sample C Male 212.0
Sample D Male 217.7

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

219.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 219.5
Samples: 4

Max nTPM: 228.3
Min nTPM: 209.6
Sample A Male 224.8
Sample B Male 215.4
Sample C Female 228.3
Sample D Female 209.6

MIDBRAIN - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

16.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.4
71232800 Antisense, RP_050503_02_A03, Mouse strain C57BL/6J (56 days, male) 16.4

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