MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.3 nTPM
HPA Brain:73.4 nTPM
GTEx:53.3 nTPM
FANTOM5:292.6 Scaled Tags Per Million
Pig:170.0 nTPM
Mouse:74.7 nTPM
Allen mouse:3.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 73.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.9
1870 Female, age 42, unknown 75.5
2411 Female, age 72, unknown 67.1
1830 Male, age 51, unknown 63.6
2019 Male, age 18, unknown 61.6
1833 Male, age 53, unknown 60.3
2666 Male, age 74, left hemisphere 46.2
2586 Male, age 75, left hemisphere 44.0
2828 Female, age 72, unknown 41.6
1827 Male, age 72, unknown 40.1
2219 Male, age 76, both hemispheres 39.4
Dorsal raphe nucleus
nTPM: 69.2
2750 Male, age 76, both hemispheres 80.6
2298 Female, age 72, unknown 68.6
2016 Female, age 72, unknown 68.2
1828 Male, age 53, unknown 66.6
2047 Male, age 72, unknown 61.9
Inferior colliculus
nTPM: 46.9
1848 Female, age 42, unknown 48.7
1890 Male, age 53, unknown 48.5
2097 Female, age 72, unknown 47.3
2849 Male, age 72, unknown 42.9
Median raphe nucleus
nTPM: 73.4
2220 Male, age 76, midline 73.4
Periaquaductal grey, anterior
nTPM: 53.1
1947 Male, age 18, unknown 64.2
2502 Female, age 75, unknown 50.9
1795 Male, age 51, unknown 44.1
Periaquaductal grey, dorsal
nTPM: 52.6
2850 Male, age 76, both hemispheres 70.2
1840 Male, age 53, unknown 47.7
1831 Male, age 72, unknown 47.1
2464 Female, age 72, unknown 45.3
Periaquaductal grey, lateral
nTPM: 55.4
2272 Male, age 74, both hemispheres 66.1
2140 Male, age 76, both hemispheres 54.9
2053 Male, age 18, unknown 45.3
Pretectal area
nTPM: 48.4
2273 Male, age 74, both hemispheres 67.6
2224 Female, age 72, unknown 61.2
2667 Female, age 75, unknown 52.9
1817 Female, age 42, unknown 51.3
1815 Male, age 53, unknown 50.8
2007 Male, age 72, unknown 46.4
2825 Male, age 18, unknown 46.1
2316 Male, age 76, right hemisphere 44.4
1944 Female, age 72, unknown 40.4
1816 Male, age 51, unknown 36.6
2407 Male, age 75, both hemispheres 34.7
Red nucleus
nTPM: 61.5
1821 Female, age 72, unknown 76.0
1865 Male, age 51, unknown 71.5
1954 Female, age 42, unknown 70.1
1904 Male, age 53, unknown 67.0
2769 Male, age 72, unknown 67.0
2227 Male, age 72, unknown 64.0
2823 Male, age 76, right hemisphere 63.1
2785 Male, age 18, unknown 56.3
2503 Female, age 72, unknown 56.2
2725 Female, age 75, unknown 55.8
2584 Male, age 75, left hemisphere 48.4
2588 Male, age 74, left hemisphere 42.9
Substantia nigra
nTPM: 59.8
2241 Male, age 72, unknown 73.7
2409 Female, age 72, unknown 67.6
1916 Female, age 42, unknown 66.1
1851 Male, age 51, unknown 64.6
1889 Female, age 72, unknown 62.6
2590 Female, age 75, unknown 58.2
2699 Male, age 18, unknown 56.3
1941 Male, age 53, unknown 55.2
2583 Male, age 75, right hemisphere 54.0
2665 Male, age 74, both hemispheres 39.5
Superior colliculus
nTPM: 48.5
1913 Female, age 42, unknown 66.7
1995 Male, age 72, unknown 58.7
2587 Male, age 74, left hemisphere 58.7
1839 Male, age 51, unknown 49.6
2668 Female, age 75, unknown 48.7
2261 Male, age 18, unknown 46.8
1895 Male, age 76, right hemisphere 41.2
1796 Male, age 53, unknown 41.1
2087 Female, age 72, unknown 41.0
2664 Male, age 75, both hemispheres 32.7
Ventral tegmental area
nTPM: 67.6
2223 Female, age 72, unknown 86.3
2410 Female, age 72, unknown 66.6
2021 Male, age 53, unknown 66.4
1942 Male, age 51, unknown 63.5
2218 Male, age 76, both hemispheres 62.6
1915 Female, age 42, unknown 60.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 53.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.3
Samples: 183

Max nTPM: 106.2
Min nTPM: 28.5
Std nTPM: 14.5
Median nTPM: 50.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 106.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 94.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 90.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 89.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 88.5
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 88.3
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 87.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 87.3
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 86.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 85.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 85.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 292.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 292.6
FF:10158-103A5 76 years, female 292.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 170.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 170.0
Samples: 4

Max nTPM: 232.6
Min nTPM: 105.6
Sample A Female 200.1
Sample B Female 141.7
Sample C Male 232.6
Sample D Male 105.6
Midbrain
nTPM: 104.3
Samples: 4

Max nTPM: 157.3
Min nTPM: 66.5
Sample A Female 157.3
Sample B Female 115.9
Sample C Male 77.3
Sample D Male 66.5
Periaqueductal gray
nTPM: 95.9
Samples: 3

Max nTPM: 110.9
Min nTPM: 84.8
Sample B Female 84.8
Sample C Male 110.9
Sample D Male 92.1
Superior colliculi
nTPM: 94.7
Samples: 4

Max nTPM: 105.9
Min nTPM: 84.1
Sample A Female 105.9
Sample B Female 97.6
Sample C Male 84.1
Sample D Male 91.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 74.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.7
Samples: 4

Max nTPM: 79.2
Min nTPM: 70.8
Sample A Male 70.8
Sample B Male 74.9
Sample C Female 79.2
Sample D Female 73.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
68443208 Antisense, RP_050111_01_E10, Mouse strain C57BL/6J (56 days, male) 4.4
75749771 Antisense, RP_060518_01_B01, Mouse strain C57BL/6J (56 days, male) 2.1

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