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  • TMBIM1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:141.8 nTPM
HPA Brain:196.5 nTPM
GTEx:141.8 nTPM
FANTOM5:357.1 Scaled Tags Per Million
Pig:97.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

196.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 180.2
2565 Male, age 75, midline 240.5
2048 Male, age 55, midline 179.5
1981 Female, age 72, midline 178.9
2816 Male, age 47, midline 164.5
2194 Female, age 79, both hemispheres 137.6
Cervical spinal cord, dorsal horn
nTPM: 171.6
2173 Female, age 72, unknown 220.0
2296 Male, age 66, both hemispheres 178.6
2069 Male, age 47, both hemispheres 168.3
2721 Male, age 90, both hemispheres 164.4
1877 Male, age 55, unknown 156.7
2297 Male, age 75, both hemispheres 141.9
Cervical spinal cord, ventral horn
nTPM: 196.5
2809 Male, age 90, both hemispheres 248.2
2098 Female, age 72, unknown 233.9
2480 Male, age 75, both hemispheres 203.6
2295 Male, age 66, both hemispheres 190.8
2820 Female, age 79, both hemispheres 157.7
2068 Male, age 55, unknown 144.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 141.8
Samples: 204

Max nTPM: 246.7
Min nTPM: 41.6
Std nTPM: 41.5
Median nTPM: 138.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 246.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 243.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 237.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 235.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 233.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 229.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 226.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 223.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 219.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 218.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 213.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 213.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 212.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 211.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 208.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 207.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 207.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 199.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 199.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 197.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 197.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 194.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 194.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 194.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 194.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 192.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 192.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 191.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 189.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 187.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 187.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 185.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 183.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 181.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 180.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 178.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 178.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 177.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 177.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 174.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 174.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 174.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 173.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 171.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 169.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 169.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 169.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 168.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 168.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 167.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 167.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 167.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 167.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 166.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 166.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 166.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 164.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 164.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 163.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 163.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 162.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 162.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 162.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 162.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 161.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 161.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 161.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 160.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 158.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 158.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 157.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 157.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 156.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 156.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 156.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 155.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 154.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 154.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 154.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 154.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 153.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 153.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 152.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 150.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 150.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 150.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 149.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 149.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 149.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 149.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 148.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 148.5
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 148.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 147.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 146.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 146.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 145.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 145.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 142.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 140.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 139.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 139.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 138.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 137.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 136.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 136.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 136.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 135.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 135.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 134.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 133.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 133.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 132.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 132.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 132.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 132.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 131.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 131.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 130.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 129.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 129.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 128.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 128.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 127.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 127.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 127.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 126.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 126.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 125.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 125.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 125.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 125.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 124.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 124.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 124.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 122.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 122.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 122.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 120.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 120.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 120.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 119.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 119.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 118.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 117.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 117.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 117.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 116.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 115.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 115.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 114.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 114.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 113.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 112.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 111.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 111.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 110.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 109.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 107.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 107.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 106.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 105.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 105.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 105.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 104.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 104.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 103.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 102.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 102.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 101.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 99.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 99.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 97.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 97.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 96.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 95.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 95.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 94.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 93.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 93.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 92.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 91.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 89.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 89.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 88.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 87.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 86.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 84.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 82.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 81.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 81.3
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 77.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 76.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 75.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 73.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 72.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 69.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 67.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 64.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 62.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 61.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 60.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 55.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 41.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

357.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 357.1
FF:10181-103D1 60 years, female 412.0
FF:10159-103A6 76 years, female 302.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 97.5
Samples: 4

Max nTPM: 133.1
Min nTPM: 81.5
Sample A Female 85.2
Sample B Female 90.1
Sample C Male 133.1
Sample D Male 81.5
Ventral spinal cord
nTPM: 97.6
Samples: 4

Max nTPM: 103.8
Min nTPM: 92.8
Sample A Female 97.3
Sample B Female 92.8
Sample C Male 96.6
Sample D Male 103.8

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