MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:237.4 nTPM
HPA Brain:178.3 nTPM
GTEx:237.4 nTPM
FANTOM5:118.4 Scaled Tags Per Million
Pig:316.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 178.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 133.2
2411 Female, age 72, unknown 167.5
1833 Male, age 53, unknown 150.0
1870 Female, age 42, unknown 148.3
2219 Male, age 76, both hemispheres 134.9
1830 Male, age 51, unknown 132.8
2019 Male, age 18, unknown 130.6
2586 Male, age 75, left hemisphere 128.0
2666 Male, age 74, left hemisphere 125.2
1827 Male, age 72, unknown 122.2
2828 Female, age 72, unknown 92.4
Dorsal raphe nucleus
nTPM: 178.3
1828 Male, age 53, unknown 239.2
2047 Male, age 72, unknown 200.4
2298 Female, age 72, unknown 185.7
2016 Female, age 72, unknown 136.2
2750 Male, age 76, both hemispheres 130.0
Inferior colliculus
nTPM: 165.2
1848 Female, age 42, unknown 179.4
2849 Male, age 72, unknown 168.3
2097 Female, age 72, unknown 163.9
1890 Male, age 53, unknown 149.1
Median raphe nucleus
nTPM: 164.1
2220 Male, age 76, midline 164.1
Periaquaductal grey, anterior
nTPM: 137.7
1947 Male, age 18, unknown 165.0
2502 Female, age 75, unknown 132.0
1795 Male, age 51, unknown 116.1
Periaquaductal grey, dorsal
nTPM: 130.9
2850 Male, age 76, both hemispheres 145.8
1840 Male, age 53, unknown 142.3
2464 Female, age 72, unknown 124.9
1831 Male, age 72, unknown 110.5
Periaquaductal grey, lateral
nTPM: 126.5
2272 Male, age 74, both hemispheres 135.2
2140 Male, age 76, both hemispheres 127.0
2053 Male, age 18, unknown 117.4
Pretectal area
nTPM: 121.3
2825 Male, age 18, unknown 156.6
2224 Female, age 72, unknown 147.0
2667 Female, age 75, unknown 141.2
1817 Female, age 42, unknown 129.3
2007 Male, age 72, unknown 126.0
2273 Male, age 74, both hemispheres 125.2
2316 Male, age 76, right hemisphere 117.2
1816 Male, age 51, unknown 103.1
1944 Female, age 72, unknown 100.8
2407 Male, age 75, both hemispheres 98.0
1815 Male, age 53, unknown 89.5
Red nucleus
nTPM: 146.3
1821 Female, age 72, unknown 240.1
2769 Male, age 72, unknown 176.5
2227 Male, age 72, unknown 175.7
1954 Female, age 42, unknown 159.1
2823 Male, age 76, right hemisphere 148.8
1865 Male, age 51, unknown 137.8
2503 Female, age 72, unknown 132.4
2725 Female, age 75, unknown 124.1
2588 Male, age 74, left hemisphere 123.8
1904 Male, age 53, unknown 120.9
2785 Male, age 18, unknown 109.1
2584 Male, age 75, left hemisphere 107.5
Substantia nigra
nTPM: 173.1
1916 Female, age 42, unknown 219.1
1941 Male, age 53, unknown 207.2
2241 Male, age 72, unknown 199.5
1851 Male, age 51, unknown 182.1
2409 Female, age 72, unknown 175.1
2699 Male, age 18, unknown 173.7
2665 Male, age 74, both hemispheres 166.4
1889 Female, age 72, unknown 156.3
2590 Female, age 75, unknown 140.6
2583 Male, age 75, right hemisphere 111.1
Superior colliculus
nTPM: 110.3
1895 Male, age 76, right hemisphere 167.2
1839 Male, age 51, unknown 152.8
2587 Male, age 74, left hemisphere 138.5
2668 Female, age 75, unknown 127.3
1796 Male, age 53, unknown 112.9
2664 Male, age 75, both hemispheres 98.4
2261 Male, age 18, unknown 91.7
2087 Female, age 72, unknown 91.1
1913 Female, age 42, unknown 63.8
1995 Male, age 72, unknown 59.5
Ventral tegmental area
nTPM: 159.0
1915 Female, age 42, unknown 198.2
2410 Female, age 72, unknown 183.4
2218 Male, age 76, both hemispheres 166.2
2223 Female, age 72, unknown 144.9
1942 Male, age 51, unknown 140.2
2021 Male, age 53, unknown 121.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 237.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 237.4
Samples: 183

Max nTPM: 665.0
Min nTPM: 87.1
Std nTPM: 95.7
Median nTPM: 226.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 665.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 527.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 481.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 475.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 463.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 458.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 454.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 444.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 442.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 431.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 420.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 118.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 118.4
FF:10158-103A5 76 years, female 118.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 316.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 301.4
Samples: 4

Max nTPM: 374.9
Min nTPM: 238.6
Sample A Female 320.1
Sample B Female 238.6
Sample C Male 374.9
Sample D Male 272.0
Midbrain
nTPM: 302.3
Samples: 4

Max nTPM: 321.8
Min nTPM: 283.9
Sample A Female 321.8
Sample B Female 283.9
Sample C Male 304.6
Sample D Male 299.0
Periaqueductal gray
nTPM: 293.5
Samples: 3

Max nTPM: 358.9
Min nTPM: 255.5
Sample B Female 255.5
Sample C Male 358.9
Sample D Male 266.2
Superior colliculi
nTPM: 316.0
Samples: 4

Max nTPM: 361.5
Min nTPM: 225.2
Sample A Female 351.3
Sample B Female 225.2
Sample C Male 361.5
Sample D Male 326.1

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