HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:7.5 nTPM
HPA Brain:35.9 nTPM
GTEx:7.5 nTPM
FANTOM5:9.2 Scaled Tags Per Million
Pig:5.9 nTPM
Mouse:12.2 nTPM
Allen mouse:10.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041680
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 35.9
Sample id Sample description nTPM
Hippocampus
nTPM: 31.3
1855 Male, age 76, left hemisphere 43.8
2148 Female, age 91, left hemisphere 35.3
1898 Male, age 80, left hemisphere 32.1
2529 Female, age 94, left hemisphere 28.9
2621 Female, age 67, right hemisphere 26.0
1911 Female, age 85, right hemisphere 21.9
Dentate gyrus
nTPM: 35.9
2010 Male, age 76, both hemispheres 49.1
2530 Female, age 94, left hemisphere 42.7
2531 Female, age 67, both hemispheres 37.2
1927 Female, age 91, both hemispheres 31.4
2246 Female, age 85, both hemispheres 27.5
2528 Male, age 74, both hemispheres 27.4
Entorhinal gyrus
nTPM: 23.0
2613 Female, age 94, left hemisphere 26.0
1787 Male, age 76, left hemisphere 24.0
2764 Male, age 80, right hemisphere 23.7
2117 Female, age 91, right hemisphere 22.4
2686 Male, age 75, right hemisphere 20.9
1938 Female, age 85, left hemisphere 20.6
Hippocampus, CA1
nTPM: 34.7
2045 Male, age 76, both hemispheres 55.9
1873 Female, age 85, both hemispheres 35.2
2749 Male, age 80, left hemisphere 33.6
2527 Male, age 74, both hemispheres 24.8
2082 Female, age 91, right hemisphere 23.8
Hippocampus, CA2
nTPM: 29.2
1963 Male, age 80, left hemisphere 40.2
1892 Male, age 76, both hemispheres 36.3
2437 Female, age 94, left hemisphere 31.6
2113 Female, age 91, right hemisphere 23.4
1940 Female, age 85, left hemisphere 22.1
2249 Male, age 74, both hemispheres 21.7
Hippocampus, CA3
nTPM: 31.5
2620 Female, age 94, left hemisphere 40.9
2861 Female, age 67, both hemispheres 40.0
1867 Male, age 76, both hemispheres 37.0
2137 Male, age 80, left hemisphere 28.3
1891 Female, age 85, both hemispheres 22.3
2436 Male, age 74, both hemispheres 20.6
Parahippocampal cortex
nTPM: 20.6
2622 Female, age 67, right hemisphere 24.0
2245 Female, age 91, both hemispheres 23.9
1990 Female, age 91, right hemisphere 22.4
2692 Male, age 74, both hemispheres 21.7
2018 Male, age 76, both hemispheres 21.4
1933 Female, age 85, both hemispheres 20.4
2250 Female, age 67, right hemisphere 19.4
2532 Female, age 72, left hemisphere 19.2
2693 Female, age 94, both hemispheres 17.5
1850 Male, age 80, both hemispheres 16.6
Perirhinal gyrus
nTPM: 19.1
2521 Female, age 94, right hemisphere 21.2
1847 Female, age 91, left hemisphere 19.9
1794 Male, age 80, right hemisphere 18.9
2848 Male, age 76, right hemisphere 17.9
1841 Female, age 85, right hemisphere 17.8
Subiculum
nTPM: 23.4
2729 Female, age 91, right hemisphere 30.1
2042 Male, age 76, both hemispheres 22.9
1977 Female, age 85, both hemispheres 22.6
1901 Male, age 80, both hemispheres 22.0
2619 Male, age 74, both hemispheres 21.5
2438 Female, age 94, left hemisphere 21.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 7.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 7.5
Samples: 255

Max nTPM: 20.4
Min nTPM: 2.3
Std nTPM: 2.2
Median nTPM: 7.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 20.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 14.8
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 14.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 13.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 13.4
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 13.0
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 12.8
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 12.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 11.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 11.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 11.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 9.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 9.2
FF:10153-102I9 76 years, female 10.1
FF:10169-103B7 60 years, female 8.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 5.9
Pig sample Sample description nTPM
Subiculum
nTPM: 5.7
Samples: 4

Max nTPM: 7.0
Min nTPM: 4.9
Sample A Female 7.0
Sample B Female 4.9
Sample C Male 5.7
Sample D Male 5.0
Dorsal hippocampus
nTPM: 5.1
Samples: 4

Max nTPM: 6.3
Min nTPM: 4.2
Sample A Female 6.3
Sample B Female 4.6
Sample C Male 5.3
Sample D Male 4.2
Entorhinal cortex
nTPM: 5.9
Samples: 4

Max nTPM: 6.7
Min nTPM: 4.9
Sample A Female 6.7
Sample B Female 5.6
Sample C Male 6.2
Sample D Male 4.9
Ventral hippocampus
nTPM: 5.7
Samples: 4

Max nTPM: 8.4
Min nTPM: 4.1
Sample A Female 5.3
Sample B Female 4.1
Sample C Male 8.4
Sample D Male 4.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 12.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 11.1
Samples: 4

Max nTPM: 11.9
Min nTPM: 9.4
Sample A Male 11.9
Sample B Male 9.4
Sample C Female 11.3
Sample D Female 11.6
Hippocampal formation
nTPM: 12.2
Samples: 4

Max nTPM: 13.0
Min nTPM: 10.5
Sample A Male 10.5
Sample B Male 13.0
Sample C Female 12.8
Sample D Female 12.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 10.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.7
69079979 Antisense, RP_050324_01_A06, Mouse strain C57BL/6J (56 days, male) 13.9
74881144 Antisense, RP_060220_01_A02, Mouse strain C57BL/6J (56 days, male) 7.6

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